SRR3553274_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553274_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	392006
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	17686	4.51166563777085	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4106	1.047432947454886	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3076	0.7846818671142789	No Hit
CTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGCT	2027	0.5170839221848645	TruSeq Adapter, Index 15 (95% over 24bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1470	0.3749942602919343	No Hit
AATCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCT	606	0.154589470569328	TruSeq Adapter, Index 15 (95% over 21bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCC	565	0.14413044698295432	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGT	535	0.13647750289536384	No Hit
AAACTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCT	416	0.10612082468125489	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGTT	20	7.0275925E-4	45.000004	25
GTGCAAC	20	7.0275925E-4	45.000004	45
AAACTCG	20	7.0275925E-4	45.000004	2
CAGCGCG	55	1.8189894E-12	45.000004	1
GGTACGA	20	7.0275925E-4	45.000004	9
CGAACAT	20	7.0275925E-4	45.000004	39
TCCGCTG	20	7.0275925E-4	45.000004	11
TCACCTA	20	7.0275925E-4	45.000004	28
CTCGTGA	20	7.0275925E-4	45.000004	11
CTCGTAA	20	7.0275925E-4	45.000004	33
CACGGAT	20	7.0275925E-4	45.000004	22
AACCCTA	20	7.0275925E-4	45.000004	11
CGTGCCG	20	7.0275925E-4	45.000004	38
CTATCCA	20	7.0275925E-4	45.000004	22
ACGCAGA	20	7.0275925E-4	45.000004	41
GACACGA	70	0.0	45.000004	25
TCACACG	20	7.0275925E-4	45.000004	1
ACCGCAA	20	7.0275925E-4	45.000004	33
CATTGCG	40	6.7957444E-9	45.000004	1
TAGCGAG	20	7.0275925E-4	45.000004	1