##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553273_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 388569 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.568236272064937 31.0 31.0 34.0 30.0 34.0 2 31.779910389145815 31.0 31.0 34.0 30.0 34.0 3 31.9768972820786 33.0 31.0 34.0 30.0 34.0 4 35.7155820459172 37.0 35.0 37.0 33.0 37.0 5 35.488180992307676 37.0 35.0 37.0 33.0 37.0 6 32.6454838136856 37.0 35.0 37.0 26.0 37.0 7 34.20259979566049 37.0 35.0 37.0 27.0 37.0 8 35.31028723341286 37.0 35.0 37.0 32.0 37.0 9 37.14571671955303 39.0 37.0 39.0 34.0 39.0 10 36.692067560716374 38.0 37.0 39.0 32.0 39.0 11 36.76493750144762 39.0 37.0 39.0 32.0 39.0 12 36.83241329081836 39.0 37.0 39.0 32.0 39.0 13 36.825366923249156 39.0 37.0 39.0 33.0 39.0 14 37.927330795817475 40.0 37.0 41.0 33.0 41.0 15 37.985660204493925 40.0 37.0 41.0 33.0 41.0 16 37.9061530899274 40.0 37.0 41.0 33.0 41.0 17 37.84961229537096 39.0 37.0 41.0 33.0 41.0 18 37.63448448023389 39.0 37.0 41.0 33.0 41.0 19 37.49191778036848 39.0 35.0 41.0 32.0 41.0 20 37.37084533248921 39.0 35.0 40.0 32.0 41.0 21 37.30310704147783 39.0 35.0 40.0 32.0 41.0 22 37.236665817396656 39.0 35.0 40.0 32.0 41.0 23 37.01050263917091 39.0 35.0 40.0 32.0 41.0 24 36.92140649408471 39.0 35.0 40.0 31.0 41.0 25 36.95442508280382 39.0 35.0 40.0 31.0 41.0 26 36.87240361428729 39.0 35.0 40.0 31.0 41.0 27 36.833766975749484 39.0 35.0 40.0 31.0 41.0 28 36.76634523083416 39.0 35.0 40.0 31.0 41.0 29 36.54946483121402 38.0 35.0 40.0 31.0 41.0 30 36.557504587344845 38.0 35.0 40.0 31.0 41.0 31 36.133636496992814 38.0 35.0 40.0 30.0 41.0 32 36.18789455669392 38.0 35.0 40.0 30.0 41.0 33 36.204442454235924 38.0 35.0 40.0 30.0 41.0 34 36.16258631028209 38.0 35.0 40.0 30.0 41.0 35 36.0985951015135 38.0 35.0 40.0 30.0 41.0 36 36.01800195074749 38.0 35.0 40.0 30.0 41.0 37 35.918006840483926 38.0 35.0 40.0 30.0 41.0 38 35.79476232020568 38.0 35.0 40.0 29.0 41.0 39 35.70674191713698 38.0 35.0 40.0 29.0 41.0 40 35.57494807871961 38.0 35.0 40.0 28.0 41.0 41 35.54464715404471 38.0 35.0 40.0 28.0 41.0 42 35.42607876593346 38.0 34.0 40.0 28.0 41.0 43 35.389678538432044 38.0 34.0 40.0 27.0 41.0 44 35.21375611538748 38.0 34.0 40.0 27.0 41.0 45 35.001078315563 37.0 34.0 40.0 26.0 41.0 46 34.69639111715036 37.0 33.0 40.0 24.0 41.0 47 34.682468236014714 37.0 33.0 40.0 24.0 41.0 48 34.64129922870841 37.0 33.0 40.0 24.0 41.0 49 34.51538336820487 37.0 33.0 40.0 24.0 41.0 50 34.41716657787935 37.0 33.0 40.0 24.0 41.0 51 33.35367463693707 35.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 6.0 13 7.0 14 10.0 15 16.0 16 38.0 17 111.0 18 189.0 19 431.0 20 760.0 21 1191.0 22 1662.0 23 2134.0 24 2697.0 25 2950.0 26 3463.0 27 4169.0 28 5136.0 29 6391.0 30 8210.0 31 11099.0 32 14305.0 33 19564.0 34 27929.0 35 43967.0 36 42720.0 37 53588.0 38 69458.0 39 66360.0 40 6.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.93802902444611 36.22882937136004 17.840846799410144 25.992294804783704 2 21.928409111380475 36.36805818271658 18.00606842028057 23.697464285622374 3 19.83971958648271 37.14475421353736 18.921478553358607 24.094047646621323 4 18.55371890191961 36.91879691895133 17.60716886833484 26.920315310794223 5 16.245248591627227 40.441465994456586 16.459110222380065 26.85417519153612 6 16.386278884831267 47.088161948071 16.07796813435966 20.44759103273807 7 78.77468351824257 13.72935051432307 4.124621367118839 3.3713446003155165 8 79.84913876299962 13.04298593042677 3.3088074447524125 3.7990678618211953 9 73.22843561889908 16.998010649331263 6.327833666607476 3.445720065162172 10 26.814799945440836 49.50883884200747 10.414109205829595 13.2622520067221 11 18.213238832742704 35.609634324920414 30.027099434077346 16.150027408259536 12 21.405464666507108 30.681037344718696 30.730964127349324 17.18253386142487 13 22.582861731121113 32.65571880412488 26.982595111807683 17.778824352946323 14 17.010878376813384 37.30328461611709 27.61774614032514 18.068090866744388 15 16.156203917450952 38.93439775175065 26.311414446340294 18.597983884458102 16 19.778469203667818 36.64805993272752 25.144826272811265 18.428644590793397 17 17.61077183202983 36.92574549179168 25.950603367741635 19.512879308436855 18 17.923457609845357 36.57162563148373 25.59262318918905 19.912293569481868 19 17.904928082271102 38.817044077113714 24.92864845111164 18.349379389503536 20 18.74107301405928 38.33476165108385 25.005340106905077 17.918825227951793 21 19.5689826002589 37.38306452650623 25.12629674523701 17.92165612799786 22 18.687285913184017 35.7254438722595 25.34247456693663 20.244795647619856 23 17.167092588446327 39.92263922237749 22.763009915870796 20.147258273305386 24 15.001711407755122 39.28259845741683 26.01416994150331 19.701520193324736 25 18.259305297128694 38.04523778273614 23.660405230473867 20.035051689661294 26 18.223790369278042 38.611417791949435 22.833525062472816 20.331266776299707 27 16.81014182809231 37.25567402443324 24.7912211216026 21.142963025871854 28 16.226976418602614 36.620780350465424 27.6174887857755 19.53475444515646 29 17.29062277227468 39.180686055758436 24.46978528909923 19.05890588286765 30 18.525409901458943 37.16122490471448 25.30181254809313 19.01155264573345 31 19.870087423340514 37.540308156337744 22.82528971688426 19.764314703437485 32 18.506365664785402 37.63810288520186 24.00423090879612 19.851300541216617 33 17.83827325391372 36.44243364756324 24.07062838260386 21.648664715919182 34 16.277417910332527 37.01607693871616 26.351561756084507 20.354943394866805 35 17.423160365340518 37.68082374044249 24.589455154682952 20.30656073953403 36 18.268570060915824 36.59478754095154 25.429203050166123 19.707439347966513 37 16.832274319361552 37.58611726617409 23.417462535611435 22.16414587885292 38 18.23948899680623 38.01435523677905 24.486770689375632 19.259385077039084 39 18.70169776796399 35.620957925104676 24.838317004187157 20.83902730274417 40 19.789792803852084 36.60816997753295 24.01478244533146 19.58725477328351 41 17.50448440302752 35.73625276334448 27.62212116766906 19.137141665958943 42 18.663866649166557 36.78883287138191 24.28114440421135 20.266156075240175 43 17.55827150390278 36.02989430448646 24.619565636991116 21.792268554619643 44 20.10814038175974 33.21366346774962 24.471072061847448 22.2071240886432 45 21.036418242319897 36.13283612434343 24.35938018730264 18.47136544603404 46 19.09287668342045 35.04602786120354 26.404062084211553 19.457033371164453 47 18.42581369074733 35.65878904390211 25.785896455970498 20.12950080938006 48 17.54205816727531 34.926100641070185 27.861460898836498 19.670380292818006 49 19.93597018804897 34.21863298410321 25.175708818768356 20.66968800907947 50 17.660183905561176 33.254582841142756 25.81394810188152 23.27128515141455 51 17.364483528022053 33.00752247348605 27.71940118743389 21.90859281105801 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 19975.0 1 14846.5 2 9718.0 3 5949.0 4 2180.0 5 1762.5 6 1345.0 7 1496.0 8 1647.0 9 1794.0 10 1941.0 11 2236.0 12 2531.0 13 2772.5 14 3014.0 15 3162.0 16 3310.0 17 3186.5 18 3063.0 19 3111.5 20 3160.0 21 2737.5 22 2315.0 23 2474.5 24 2634.0 25 3257.0 26 4542.5 27 5205.0 28 6256.0 29 7307.0 30 7311.5 31 7316.0 32 8498.0 33 9680.0 34 10931.5 35 12183.0 36 12853.5 37 13524.0 38 14265.0 39 15006.0 40 17094.0 41 19182.0 42 21367.5 43 23553.0 44 26020.5 45 28488.0 46 30881.5 47 33275.0 48 32329.5 49 31384.0 50 29767.5 51 28151.0 52 26317.0 53 24483.0 54 20577.5 55 16672.0 56 15558.0 57 14444.0 58 12778.5 59 11113.0 60 9509.0 61 7905.0 62 6717.0 63 5529.0 64 4818.0 65 4107.0 66 3529.0 67 2951.0 68 2275.0 69 1599.0 70 1650.5 71 1702.0 72 1363.0 73 1024.0 74 911.0 75 705.5 76 613.0 77 432.5 78 252.0 79 211.5 80 171.0 81 164.0 82 157.0 83 94.0 84 31.0 85 28.0 86 25.0 87 15.5 88 6.0 89 9.0 90 12.0 91 7.0 92 2.0 93 3.5 94 5.0 95 2.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 388569.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.071318344572497 #Duplication Level Percentage of deduplicated Percentage of total 1 72.79188536207764 19.705723015384308 2 10.612680755040014 5.745985184180125 3 4.133775919157407 3.357202916179139 4 2.3489577471247896 2.5435753180146006 5 1.481034588530739 2.0046779412719284 6 1.0573106192989477 1.7173675418483345 7 0.8450311012286607 1.6013274166698022 8 0.6806059288090314 1.4739919812794189 9 0.5052224787199455 1.2309334700635484 >10 4.501162895578302 25.633787658677754 >50 0.6995387077562494 13.089220600556647 >100 0.33681493336412005 14.017208870912059 >500 9.964938856926629E-4 0.1556538465101953 >1k 0.0039859755427706514 2.882158918743374 >5k 0.0 0.0 >10k+ 9.964938856926629E-4 4.841185319708777 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 17946 4.618484747882615 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4098 1.0546389444345792 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3195 0.8222477861074866 No Hit CTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCTGCT 1916 0.4930913171148496 TruSeq Adapter, Index 15 (95% over 24bp) TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1475 0.3795979607225486 No Hit AATCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGTCTTCT 577 0.14849357514366818 TruSeq Adapter, Index 15 (95% over 21bp) AATGATACCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCCGT 486 0.12507431112620926 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTACCAGTATCGTATGCC 486 0.12507431112620926 No Hit CCTATTGGGAATTAAGATAAAAATGCTTAGTTATTTATGTTAGTATCTAGC 429 0.1104051017965921 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.5735454964240587E-4 0.0 0.0 0.5991213915675209 0.0 2 2.5735454964240587E-4 0.0 0.0 0.8134977314196449 0.0 3 2.5735454964240587E-4 0.0 0.0 1.0489771443424463 0.0 4 2.5735454964240587E-4 0.0 0.0 2.2315212999493013 0.0 5 2.5735454964240587E-4 0.0 0.0 2.403176784560786 0.0 6 2.5735454964240587E-4 0.0 0.0 3.3713446003155165 0.0 7 2.5735454964240587E-4 0.0 0.0 4.119988985225275 0.0 8 2.5735454964240587E-4 0.0 0.0 4.675360103353587 0.0 9 2.5735454964240587E-4 0.0 0.0 5.655623582941511 0.0 10 5.147090992848117E-4 0.0 0.0 7.11456652486431 0.0 11 5.147090992848117E-4 0.0 0.0 8.521523847759342 0.0 12 5.147090992848117E-4 0.0 0.0 9.205057531609572 0.0 13 5.147090992848117E-4 0.0 0.0 9.502044681896908 0.0 14 5.147090992848117E-4 0.0 0.0 9.768663995326442 0.0 15 5.147090992848117E-4 0.0 0.0 10.008518435593164 0.0 16 5.147090992848117E-4 0.0 0.0 10.485653770630185 0.0 17 5.147090992848117E-4 0.0 0.0 11.13676078122547 0.0 18 5.147090992848117E-4 0.0 0.0 11.98397195864827 0.0 19 5.147090992848117E-4 0.0 0.0 12.316474036786259 0.0 20 5.147090992848117E-4 0.0 0.0 12.757579734873342 0.0 21 5.147090992848117E-4 0.0 0.0 13.16059695961335 0.0 22 5.147090992848117E-4 0.0 0.0 13.629496949061814 0.0 23 5.147090992848117E-4 0.0 0.0 14.071117356248182 0.0 24 5.147090992848117E-4 0.0 0.0 14.429354889350412 0.0 25 5.147090992848117E-4 0.0 0.0 14.71681992130098 0.0 26 5.147090992848117E-4 0.0 0.0 14.97160092544696 0.0 27 5.147090992848117E-4 0.0 0.0 15.301272103538883 0.0 28 5.147090992848117E-4 0.0 0.0 15.595685708329794 0.0 29 5.147090992848117E-4 0.0 0.0 15.910945031641742 0.0 30 5.147090992848117E-4 0.0 0.0 16.352050729728827 0.0 31 5.147090992848117E-4 0.0 0.0 16.651611425512584 0.0 32 5.147090992848117E-4 0.0 0.0 16.970216357969885 0.0 33 5.147090992848117E-4 0.0 0.0 17.278527108441487 0.0 34 5.147090992848117E-4 0.0 0.0 17.602021777341992 0.0 35 5.147090992848117E-4 0.0 0.0 17.923200255295715 0.0 36 5.147090992848117E-4 0.0 0.0 18.247466987845144 0.0 37 7.720636489272175E-4 0.0 0.0 18.576623456837783 0.0 38 7.720636489272175E-4 0.0 0.0 18.85868404324586 0.0 39 7.720636489272175E-4 0.0 0.0 19.189641994085992 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTCTAGT 30 2.161778E-6 45.000004 29 CAGCGCG 30 2.161778E-6 45.000004 1 CGAACAT 30 2.161778E-6 45.000004 39 CTCAACG 30 2.161778E-6 45.000004 1 CGCGGAT 30 2.161778E-6 45.000004 23 GCGCGGA 30 2.161778E-6 45.000004 22 TAGCGAT 30 2.161778E-6 45.000004 45 ATAGCCG 30 2.161778E-6 45.000004 1 CGTTCGC 30 2.161778E-6 45.000004 18 CCATGCG 30 2.161778E-6 45.000004 1 TCAGGCG 30 2.161778E-6 45.000004 1 CCCCGGT 30 2.161778E-6 45.000004 26 CGTACTG 30 2.161778E-6 45.000004 1 GCTAGCG 30 2.161778E-6 45.000004 1 ATGCGCG 30 2.161778E-6 45.000004 28 GCGGATG 30 2.161778E-6 45.000004 24 GTCCCCG 30 2.161778E-6 45.000004 24 TGGGCGA 30 2.161778E-6 45.000004 6 ATACGCG 30 2.161778E-6 45.000004 1 CCAAACG 30 2.161778E-6 45.000004 1 >>END_MODULE