SRR3553272_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553272_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1647092
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14750	0.8955176760010977	No Hit
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	3300	0.20035310717312696	TruSeq Adapter, Index 21 (95% over 22bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2885	0.17515718611953673	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2727	0.16556452220033854	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1650	0.10017655358656348	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCTAG	30	2.1660762E-6	45.000004	1
ACCGTAT	30	2.1660762E-6	45.000004	25
GCTCGAT	30	2.1660762E-6	45.000004	15
CTATGCG	45	3.8562575E-10	45.0	1
CGTTGAC	20	7.034177E-4	45.0	11
TCGGCCA	20	7.034177E-4	45.0	30
GTTACGT	35	1.2123564E-7	45.0	33
TCGTGCA	25	3.8915437E-5	45.0	36
CGTAGTA	20	7.034177E-4	45.0	39
CGCTATT	40	6.8175723E-9	45.0	34
CATACCG	110	0.0	45.0	1
CGTACGT	25	3.8915437E-5	45.0	13
ACGCTAA	20	7.034177E-4	45.0	22
CTATTCG	55	1.8189894E-12	45.0	26
ACGTAAG	85	0.0	45.0	1
ATCGGCC	35	1.2123564E-7	45.0	32
CGACTCA	20	7.034177E-4	45.0	26
CCTATCG	25	3.8915437E-5	45.0	18
CGTTTAG	25	3.8915437E-5	45.0	1
CAATACG	55	1.8189894E-12	45.0	1