SRR3553271_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553271_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1640785
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14647	0.892682466014743	No Hit
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	3077	0.18753218733715873	TruSeq Adapter, Index 21 (95% over 22bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2982	0.18174227580091237	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2702	0.1646772733782915	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1688	0.10287758603351445	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGCCG	25	3.8915372E-5	45.0	1
TTGTCGA	25	3.8915372E-5	45.0	12
CGCGCAT	20	7.0341694E-4	45.0	41
CGTCTAC	25	3.8915372E-5	45.0	13
TTATCGT	45	3.8562575E-10	45.0	21
CGCCTAT	20	7.0341694E-4	45.0	41
CCGTAAA	25	3.8915372E-5	45.0	30
CGCTATT	25	3.8915372E-5	45.0	34
ACGTCGT	25	3.8915372E-5	45.0	18
ACGTAGC	20	7.0341694E-4	45.0	1
CAGTCGA	20	7.0341694E-4	45.0	28
ACGTAAG	100	0.0	45.0	1
ATCGGGT	55	1.8189894E-12	45.0	4
GGCGAAT	35	1.2123564E-7	45.0	8
CGTTTAG	25	3.8915372E-5	45.0	1
TTCGACG	20	7.0341694E-4	45.0	1
TACGTCG	90	0.0	45.0	1
TATCCGT	20	7.0341694E-4	45.0	30
ACGCCTA	30	2.1660726E-6	44.999996	14
TCCGCAC	30	2.1660726E-6	44.999996	43