SRR3553266_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553266_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	952881
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13533	1.4202193138492634	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3091	0.32438468182280894	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2512	0.2636215854865403	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1529	0.16046075008316882	No Hit
CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT	1522	0.1597261357924022	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCATAT	60	0.0	45.000004	30
ATCCGAT	30	2.1651085E-6	45.000004	15
CTTACGT	60	0.0	45.000004	43
CTAGCGT	30	2.1651085E-6	45.000004	2
AAACTCG	35	1.2116288E-7	45.0	1
CGAAATT	25	3.8903017E-5	45.0	22
CAACGAA	20	7.0326787E-4	45.0	26
CCGATAG	40	6.8121153E-9	45.0	1
CGCATTA	25	3.8903017E-5	45.0	45
CGCATAT	25	3.8903017E-5	45.0	29
CCGGATA	25	3.8903017E-5	45.0	13
TAAACGT	20	7.0326787E-4	45.0	16
CAATTGA	25	3.8903017E-5	45.0	34
CGACAAT	25	3.8903017E-5	45.0	44
CGTTACG	45	3.8380676E-10	45.0	1
ACGATAG	35	1.2116288E-7	45.0	1
CGTAGAT	20	7.0326787E-4	45.0	13
AACGCGT	20	7.0326787E-4	45.0	39
CCATACG	45	3.8380676E-10	45.0	1
ACTACGC	25	3.8903017E-5	45.0	17