##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553266_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 952881 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.698714739825853 31.0 31.0 34.0 30.0 34.0 2 31.89442123413102 33.0 31.0 34.0 30.0 34.0 3 32.06256185189966 33.0 31.0 34.0 30.0 34.0 4 35.77083392364839 37.0 35.0 37.0 35.0 37.0 5 35.527666098914764 37.0 35.0 37.0 33.0 37.0 6 34.19025250792072 37.0 35.0 37.0 32.0 37.0 7 34.973022864345076 37.0 35.0 37.0 32.0 37.0 8 35.64789622208859 37.0 35.0 37.0 33.0 37.0 9 37.36093908893135 39.0 37.0 39.0 35.0 39.0 10 36.766729528660974 39.0 37.0 39.0 32.0 39.0 11 36.751720309251624 39.0 37.0 39.0 32.0 39.0 12 36.635323823226614 39.0 35.0 39.0 32.0 39.0 13 36.60057971562031 39.0 35.0 39.0 32.0 39.0 14 37.75592230299481 40.0 37.0 41.0 33.0 41.0 15 37.75167623239418 40.0 37.0 41.0 33.0 41.0 16 37.69960467256667 40.0 36.0 41.0 33.0 41.0 17 37.66855567484292 39.0 36.0 41.0 33.0 41.0 18 37.583933355791544 39.0 36.0 41.0 33.0 41.0 19 37.57588932930765 39.0 36.0 41.0 32.0 41.0 20 37.436401817225864 39.0 36.0 41.0 32.0 41.0 21 37.42250396429355 39.0 36.0 41.0 32.0 41.0 22 37.36742678256781 39.0 36.0 41.0 32.0 41.0 23 37.180499978486296 39.0 35.0 41.0 32.0 41.0 24 36.98444926491346 39.0 35.0 40.0 31.0 41.0 25 37.01545628467773 39.0 35.0 40.0 31.0 41.0 26 36.96879043658127 39.0 35.0 40.0 31.0 41.0 27 36.885945884113546 39.0 35.0 40.0 31.0 41.0 28 36.77470429151174 39.0 35.0 40.0 31.0 41.0 29 36.625916562508856 39.0 35.0 40.0 31.0 41.0 30 36.617534613451205 39.0 35.0 40.0 31.0 41.0 31 36.56581356958529 39.0 35.0 40.0 30.0 41.0 32 36.45775600520947 39.0 35.0 40.0 30.0 41.0 33 36.375139183171875 39.0 35.0 40.0 30.0 41.0 34 36.278024223381514 38.0 35.0 40.0 30.0 41.0 35 36.149417398394974 38.0 35.0 40.0 30.0 41.0 36 36.06864865602316 38.0 35.0 40.0 30.0 41.0 37 35.98474730842571 38.0 35.0 40.0 29.0 41.0 38 35.86349187359177 38.0 35.0 40.0 29.0 41.0 39 35.831646344087034 38.0 35.0 40.0 29.0 41.0 40 35.67226022976636 38.0 34.0 40.0 29.0 41.0 41 35.54290829599918 38.0 34.0 40.0 28.0 41.0 42 35.410257944066466 38.0 34.0 40.0 27.0 41.0 43 35.31045954321684 38.0 34.0 40.0 27.0 41.0 44 35.19164302782824 38.0 34.0 40.0 27.0 41.0 45 35.00786666960512 37.0 34.0 40.0 26.0 41.0 46 34.82632353882594 37.0 33.0 40.0 26.0 41.0 47 34.72721882375659 37.0 33.0 40.0 26.0 41.0 48 34.53759388632998 37.0 33.0 40.0 25.0 41.0 49 34.34693524165137 36.0 33.0 40.0 24.0 41.0 50 34.27240127571019 36.0 33.0 40.0 24.0 41.0 51 33.067529943403215 35.0 31.0 39.0 21.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 7.0 9 12.0 10 20.0 11 18.0 12 43.0 13 35.0 14 58.0 15 89.0 16 160.0 17 315.0 18 640.0 19 1041.0 20 1645.0 21 2501.0 22 3594.0 23 4652.0 24 5948.0 25 7459.0 26 8771.0 27 10733.0 28 13344.0 29 16523.0 30 20981.0 31 27148.0 32 35192.0 33 48017.0 34 69655.0 35 88499.0 36 97709.0 37 130740.0 38 179520.0 39 177786.0 40 25.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.989419455314987 32.40478086980431 18.01263746469916 27.593162210181543 2 23.50492873716655 31.66271549123133 18.973408012123237 25.858947759478884 3 21.503419629523517 31.127391563059813 20.291830774251977 27.07735803316469 4 21.30087597506929 32.004835860931216 18.90288504020964 27.791403123789856 5 18.62089809745393 34.804136088346816 16.216295633977378 30.358670180221875 6 19.207645025979108 40.85420949730344 18.184956988333276 21.753188488384172 7 84.99424377230736 7.4543410982063865 4.129476818196606 3.421938311289657 8 86.0322537651606 7.124709171449531 3.4750404300222164 3.36799663336765 9 80.00988580945575 9.698482811599769 5.855505566802151 4.436125812142334 10 37.86149582161886 32.392712206456 13.042447063169483 16.703344908755657 11 27.712589504880462 31.45471470204569 22.11587805822553 18.716817734848316 12 26.53447807228814 26.467943006524425 27.40457622725188 19.59300269393555 13 26.249552672369376 25.545372402220213 26.918051676967007 21.287023248443404 14 22.261331687797323 28.325362768278517 26.989624097867416 22.423681446056747 15 20.852551367904283 30.376615757896317 26.557775839795315 22.213057034404084 16 22.508791758886996 28.146011936432775 26.872400646040795 22.47279565863943 17 21.74857091284221 28.44730874054578 27.24589954044629 22.55822080616572 18 22.703779380636195 28.51541797978971 26.296463042079754 22.484339597494333 19 23.8957435398544 29.76604633737056 24.17164367848661 22.166566444288428 20 22.63199706993843 29.534432945981713 25.6236612966362 22.209908687443658 21 25.463095601654352 28.07517412982314 25.329395800734822 21.13233446778769 22 24.113189369921322 27.190068854348027 25.16736087717144 23.52938089855921 23 23.64754885447396 29.61828392002779 24.272915505713723 22.461251719784528 24 20.56542212511321 30.33453285352526 27.13497278254053 21.96507223882101 25 22.84702916733569 31.15562174080499 23.47512438594116 22.522224705918156 26 23.900990784788448 29.282040464654035 23.50010127182723 23.316867478730295 27 21.77134395585598 28.669791925749383 25.875843888166518 23.68302023022812 28 22.440157795149656 29.315307997535893 27.0480784064327 21.196455800881747 29 22.744812836020447 28.969724446179534 25.067243443829817 23.218219273970202 30 23.217274769882074 28.874014698582513 26.306222917657085 21.60248761387833 31 24.588274926249973 29.137006614676963 22.48601871587323 23.788699743199835 32 23.63317140335467 27.991218210878376 25.59049870865302 22.78511167711393 33 22.880191755318872 27.637763792120946 25.23683440009823 24.245210052461953 34 21.203067329498644 29.031746881299973 26.712674510248398 23.052511278952988 35 23.736856963251444 27.756246582731738 26.5782400950381 21.928656358978717 36 24.08286029420253 29.09345448172437 24.692800045336195 22.130885178736904 37 23.32001582569072 28.610393113095967 25.84394063896751 22.2256504222458 38 23.125447983536244 28.26407494744884 27.35808563713622 21.252391431878692 39 23.27342029067638 27.451066817367543 25.82557528169834 23.449937610257734 40 23.13258423664655 28.798874151126952 25.434865423909176 22.633676188317324 41 22.444670425792935 27.433855853983868 26.720755267446826 23.40071845277637 42 22.817854485502387 27.61939843485178 25.779294581380046 23.783452498265785 43 22.19689552000722 26.874919323609138 26.202432412861626 24.725752743522015 44 22.90275490853527 26.446849081889557 26.590938427778493 24.05945758179668 45 24.005935683469396 27.584241893793664 25.914148776185066 22.49567364655188 46 23.311200454201522 27.749005384722754 26.67101138547206 22.26878277560367 47 22.58025923488872 28.307836970198796 26.57278296030669 22.539120834605793 48 21.944083259084817 27.76285811134864 28.378254997213716 21.914803632352832 49 22.326082690283467 27.942313888093057 27.618768765459695 22.112834656163784 50 22.618144343312544 26.880901182833956 27.06980200045966 23.431152473393844 51 22.24800368566484 26.665869085436693 27.493884336029367 23.592242892869102 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 15624.0 1 11868.0 2 8112.0 3 5124.5 4 2137.0 5 1931.0 6 1725.0 7 1860.0 8 1995.0 9 2299.0 10 2603.0 11 2811.0 12 3019.0 13 2963.5 14 2908.0 15 3023.0 16 3138.0 17 3223.0 18 3308.0 19 3215.0 20 3122.0 21 3401.0 22 3680.0 23 3989.0 24 4298.0 25 5098.5 26 7439.0 27 8979.0 28 11550.0 29 14121.0 30 17330.5 31 20540.0 32 22368.0 33 24196.0 34 25296.0 35 26396.0 36 27807.5 37 29219.0 38 31375.5 39 33532.0 40 35680.0 41 37828.0 42 39958.0 43 42088.0 44 47661.5 45 53235.0 46 55577.5 47 57920.0 48 63414.0 49 68908.0 50 69047.0 51 69186.0 52 64048.0 53 58910.0 54 54832.5 55 50755.0 56 48994.5 57 47234.0 58 46363.0 59 45492.0 60 43053.5 61 40615.0 62 37351.5 63 34088.0 64 32849.0 65 31610.0 66 28118.5 67 24627.0 68 22394.5 69 20162.0 70 18357.5 71 16553.0 72 14777.5 73 13002.0 74 10863.5 75 7466.5 76 6208.0 77 4608.0 78 3008.0 79 2585.5 80 2163.0 81 1655.5 82 1148.0 83 815.5 84 483.0 85 342.5 86 202.0 87 149.0 88 96.0 89 70.0 90 44.0 91 32.5 92 21.0 93 18.0 94 15.0 95 9.0 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 952881.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.27838974300351 #Duplication Level Percentage of deduplicated Percentage of total 1 78.04571758100647 16.606871964610363 2 8.829795404695426 3.757676559441814 3 3.1246722397635653 1.9946398121049858 4 1.6664738218490631 1.4183951791126783 5 1.028550267733609 1.0942946733553167 6 0.7285490042027674 0.9301409794982152 7 0.4959793633939242 0.7387549539147881 8 0.4071673078628848 0.6931091733852767 9 0.3009809717112839 0.5763951379170551 >10 3.1028718651799525 15.31147773324346 >50 1.2389627715916067 19.182619601145674 >100 1.0206789553894215 34.36819261824564 >500 0.007074012562104902 0.9419551625459089 >1k 0.0020211464463156864 0.9304508591110943 >5k 0.0 0.0 >10k+ 5.052866115789216E-4 1.455025592367742 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 13533 1.4202193138492634 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3091 0.32438468182280894 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2512 0.2636215854865403 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1529 0.16046075008316882 No Hit CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT 1522 0.1597261357924022 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.148346960428427E-4 0.0 0.0 0.194148062559753 0.0 2 3.148346960428427E-4 0.0 0.0 0.2810424386675776 0.0 3 3.148346960428427E-4 0.0 0.0 0.3918642516746582 0.0 4 3.148346960428427E-4 0.0 0.0 0.8754503447964647 0.0 5 3.148346960428427E-4 0.0 0.0 0.962659555600332 0.0 6 3.148346960428427E-4 0.0 0.0 1.480982410185532 0.0 7 3.148346960428427E-4 0.0 0.0 1.8399989085730537 0.0 8 3.148346960428427E-4 0.0 0.0 2.161025353638072 0.0 9 3.148346960428427E-4 0.0 0.0 2.6446114467598787 0.0 10 3.148346960428427E-4 0.0 0.0 3.402628449932363 0.0 11 3.148346960428427E-4 0.0 0.0 4.10785816906833 0.0 12 3.148346960428427E-4 0.0 0.0 4.400759381286855 0.0 13 4.197795947237903E-4 0.0 0.0 4.54191027001273 0.0 14 4.197795947237903E-4 0.0 0.0 4.687468844483204 0.0 15 4.197795947237903E-4 0.0 0.0 4.814557116785831 0.0 16 4.197795947237903E-4 0.0 0.0 5.05582543885333 0.0 17 4.197795947237903E-4 0.0 0.0 5.338127216305079 0.0 18 4.197795947237903E-4 0.0 0.0 5.7148794025696805 0.0 19 4.197795947237903E-4 0.0 0.0 5.872296750591103 0.0 20 4.197795947237903E-4 0.0 0.0 6.063086576393065 0.0 21 4.197795947237903E-4 0.0 0.0 6.264580781860484 0.0 22 4.197795947237903E-4 0.0 0.0 6.472686515944803 0.0 23 4.197795947237903E-4 0.0 0.0 6.691706519491941 0.0 24 4.197795947237903E-4 0.0 0.0 6.85667990021839 0.0 25 4.197795947237903E-4 0.0 0.0 7.0020285848915025 0.0 26 4.197795947237903E-4 0.0 0.0 7.133839377634773 0.0 27 4.197795947237903E-4 0.0 0.0 7.284540252140614 0.0 28 4.197795947237903E-4 0.0 0.0 7.450668026752553 0.0 29 4.197795947237903E-4 0.0 0.0 7.612388115619893 0.0 30 4.197795947237903E-4 0.0 0.0 7.820493849704213 0.0 31 4.197795947237903E-4 0.0 0.0 7.9748677956638865 0.0 32 4.197795947237903E-4 0.0 0.0 8.138371947808803 0.0 33 4.197795947237903E-4 0.0 0.0 8.306178840799639 0.0 34 4.197795947237903E-4 0.0 0.0 8.455410486723945 0.0 35 4.197795947237903E-4 0.0 0.0 8.634341538974962 0.0 36 4.197795947237903E-4 0.0 0.0 8.80130887277635 0.0 37 4.197795947237903E-4 0.0 0.0 8.963973465731817 0.0 38 4.197795947237903E-4 0.0 0.0 9.14815176291688 0.0 39 4.197795947237903E-4 0.0 0.0 9.322255349828572 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCCATAT 60 0.0 45.000004 30 ATCCGAT 30 2.1651085E-6 45.000004 15 CTTACGT 60 0.0 45.000004 43 CTAGCGT 30 2.1651085E-6 45.000004 2 AAACTCG 35 1.2116288E-7 45.0 1 CGAAATT 25 3.8903017E-5 45.0 22 CAACGAA 20 7.0326787E-4 45.0 26 CCGATAG 40 6.8121153E-9 45.0 1 CGCATTA 25 3.8903017E-5 45.0 45 CGCATAT 25 3.8903017E-5 45.0 29 CCGGATA 25 3.8903017E-5 45.0 13 TAAACGT 20 7.0326787E-4 45.0 16 CAATTGA 25 3.8903017E-5 45.0 34 CGACAAT 25 3.8903017E-5 45.0 44 CGTTACG 45 3.8380676E-10 45.0 1 ACGATAG 35 1.2116288E-7 45.0 1 CGTAGAT 20 7.0326787E-4 45.0 13 AACGCGT 20 7.0326787E-4 45.0 39 CCATACG 45 3.8380676E-10 45.0 1 ACTACGC 25 3.8903017E-5 45.0 17 >>END_MODULE