SRR3553265_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553265_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	944936
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	13563	1.4353353031316407	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3243	0.34319784620334076	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2559	0.27081199149995344	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1548	0.16382061853924498	No Hit
CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT	1408	0.14900480032510138	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAATT	30	2.1650903E-6	45.000004	22
TCGATTT	25	3.8902763E-5	45.000004	19
CCGTCAA	35	1.2116288E-7	45.000004	13
CGTTACG	30	2.1650903E-6	45.000004	1
ATCCGAT	30	2.1650903E-6	45.000004	15
GTTACGG	30	2.1650903E-6	45.000004	2
TACGAAT	30	2.1650903E-6	45.000004	11
GTCCGTT	25	3.8902763E-5	45.000004	17
GCGATTA	25	3.8902763E-5	45.000004	11
CGTACTC	35	1.2116288E-7	45.000004	45
ACGTCAT	25	3.8902763E-5	45.000004	13
ATGCGTA	25	3.8902763E-5	45.000004	12
ACCCGAT	25	3.8902763E-5	45.000004	30
CGTCATC	25	3.8902763E-5	45.000004	38
TATCGCG	35	1.2116288E-7	45.000004	1
CGTCAAT	35	1.2116288E-7	45.000004	14
ATACCCG	35	1.2116288E-7	45.000004	1
TAGTCCG	25	3.8902763E-5	45.000004	1
TACGTGA	50	2.1827873E-11	45.000004	44
ACGAACT	30	2.1650903E-6	45.000004	33