SRR3553264_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553264_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	539625
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11506	2.132221450081075	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2606	0.48292795923094745	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1969	0.3648830206161686	No Hit
CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGCT	1737	0.32189020152883946	Illumina Single End Adapter 1 (95% over 23bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1105	0.20477183229094278	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGT	963	0.17845726198749132	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCC	869	0.16103775770210793	No Hit
AATCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCT	750	0.13898540653231412	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	626	0.11600648598563817	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTC	25	3.8880447E-5	45.000004	22
AGCGTAA	30	2.1633532E-6	45.000004	13
CGCGGAA	30	2.1633532E-6	45.000004	40
TAGACAG	25	3.8880447E-5	45.000004	1
CATGACG	30	2.1633532E-6	45.000004	1
ATTACCG	25	3.8880447E-5	45.000004	1
TCGATAG	30	2.1633532E-6	45.000004	1
TAGCCCG	25	3.8880447E-5	45.000004	1
CTGCGTT	25	3.8880447E-5	45.000004	24
CATTAAG	25	3.8880447E-5	45.000004	29
ACGATAC	30	2.1633532E-6	45.000004	24
ATATCCG	25	3.8880447E-5	45.000004	1
GTTCGCT	30	2.1633532E-6	45.000004	19
GAAACGT	25	3.8880447E-5	45.000004	13
AACGCCA	25	3.8880447E-5	45.000004	14
GAACGTT	25	3.8880447E-5	45.000004	21
TCATCGG	25	3.8880447E-5	45.000004	31
ATTGGGC	50	2.1827873E-11	45.000004	4
AGGATAC	25	3.8880447E-5	45.000004	28
TAGTGCG	30	2.1633532E-6	45.000004	1