##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553264_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 539625 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.656342830669445 31.0 31.0 34.0 30.0 34.0 2 31.85934120917304 33.0 31.0 34.0 30.0 34.0 3 32.023210562890895 33.0 31.0 34.0 30.0 34.0 4 35.751736854296965 37.0 35.0 37.0 35.0 37.0 5 35.48816492934908 37.0 35.0 37.0 33.0 37.0 6 34.16379893444522 37.0 35.0 37.0 32.0 37.0 7 34.92956034283067 37.0 35.0 37.0 32.0 37.0 8 35.59989437109103 37.0 35.0 37.0 32.0 37.0 9 37.295735001158214 39.0 37.0 39.0 34.0 39.0 10 36.738768589298125 39.0 37.0 39.0 32.0 39.0 11 36.72647486680565 39.0 37.0 39.0 32.0 39.0 12 36.63521334259903 39.0 35.0 39.0 32.0 39.0 13 36.59519481121149 39.0 35.0 39.0 32.0 39.0 14 37.78372202918693 40.0 37.0 41.0 33.0 41.0 15 37.784917303683116 40.0 37.0 41.0 33.0 41.0 16 37.691261524206624 40.0 36.0 41.0 33.0 41.0 17 37.617337966180216 39.0 36.0 41.0 33.0 41.0 18 37.52529627055826 39.0 36.0 41.0 33.0 41.0 19 37.483192958072735 39.0 36.0 41.0 32.0 41.0 20 37.36319666435024 39.0 35.0 41.0 32.0 41.0 21 37.32514060690294 39.0 35.0 41.0 32.0 41.0 22 37.312465137827196 39.0 35.0 41.0 32.0 41.0 23 37.13668380820014 39.0 35.0 40.0 32.0 41.0 24 36.89150428538337 39.0 35.0 40.0 31.0 41.0 25 36.95800602270095 39.0 35.0 40.0 31.0 41.0 26 36.86341626129256 39.0 35.0 40.0 31.0 41.0 27 36.82350521195274 39.0 35.0 40.0 31.0 41.0 28 36.75930321982858 39.0 35.0 40.0 31.0 41.0 29 36.51886958536021 39.0 35.0 40.0 30.0 41.0 30 36.555437572388236 39.0 35.0 40.0 30.0 41.0 31 36.455659022469305 38.0 35.0 40.0 30.0 41.0 32 36.34246745425064 38.0 35.0 40.0 30.0 41.0 33 36.29076302988186 38.0 35.0 40.0 30.0 41.0 34 36.195517257354645 38.0 35.0 40.0 30.0 41.0 35 36.06605513087793 38.0 35.0 40.0 30.0 41.0 36 35.94312902478573 38.0 35.0 40.0 29.0 41.0 37 35.892510539726665 38.0 35.0 40.0 29.0 41.0 38 35.80256474403521 38.0 35.0 40.0 29.0 41.0 39 35.72307250405374 38.0 35.0 40.0 29.0 41.0 40 35.54144452165856 38.0 34.0 40.0 28.0 41.0 41 35.43236136205699 38.0 34.0 40.0 27.0 41.0 42 35.32559277275886 38.0 34.0 40.0 27.0 41.0 43 35.236655084549454 38.0 34.0 40.0 27.0 41.0 44 35.133009034051426 38.0 34.0 40.0 27.0 41.0 45 34.93726013435256 37.0 34.0 40.0 26.0 41.0 46 34.75884364141765 37.0 33.0 40.0 26.0 41.0 47 34.675487607134585 37.0 33.0 40.0 25.0 41.0 48 34.52337827194811 37.0 33.0 40.0 25.0 41.0 49 34.350033819782254 36.0 33.0 40.0 24.0 41.0 50 34.245175816539266 36.0 33.0 40.0 24.0 41.0 51 33.0634829742877 35.0 31.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 5.0 11 6.0 12 16.0 13 26.0 14 22.0 15 58.0 16 77.0 17 187.0 18 353.0 19 628.0 20 1076.0 21 1520.0 22 2195.0 23 2916.0 24 3667.0 25 4461.0 26 5213.0 27 6220.0 28 7600.0 29 9503.0 30 12324.0 31 15268.0 32 19975.0 33 26562.0 34 39189.0 35 51873.0 36 55278.0 37 74012.0 38 101432.0 39 97949.0 40 13.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.27644197359277 32.739031735001156 19.462033819782256 26.522492471623814 2 23.826360898772293 32.335047486680565 19.341579800787585 24.497011813759556 3 20.559647903636787 32.26388695853602 21.191938846421127 25.98452629140607 4 22.514709288858004 33.93097058142228 17.704702339587676 25.849617790132033 5 19.29321287931434 36.59763724808895 15.556358582348853 28.55279129024786 6 18.110910354412788 41.780681028492005 17.888348390085707 22.220060227009498 7 83.07843409775307 9.094278434097754 4.113597405605745 3.713690062543433 8 83.91494093120222 8.152142691684041 3.9134584201992126 4.019457956914524 9 78.65406532314107 11.217419504285383 6.181885568681955 3.9466296038915916 10 35.166643502432244 35.97665045170257 12.674542506370164 16.182163539495022 11 25.95320824646745 31.688116747741486 23.28746814917767 19.07120685661339 12 25.667639564512395 27.05286078295112 27.878990039379197 19.400509613157286 13 24.62543432939541 28.888765346305306 25.499374565670607 20.986425758628677 14 20.5422283993514 30.388881167477415 27.222608292795925 21.846282140375262 15 19.74556404910818 31.66606439657169 27.138290479499656 21.450081074820478 16 22.4848737549224 30.014176511466296 26.02881630762103 21.47213342599027 17 20.56668983090109 30.128144544822792 27.334537873523278 21.97062775075284 18 23.346212647671994 29.625017373175815 24.617651146629605 22.411118832522586 19 22.646467454250637 32.40713458420199 24.325781792911744 20.620616168635628 20 23.36882094046792 32.05967106787121 23.741672457725272 20.829835533935604 21 23.983877692842253 30.68723650683345 24.469029418577716 20.85985638174658 22 22.816585591846188 29.18489691915682 24.4015751679407 23.59694232105629 23 23.121797544591153 31.50428538336808 23.13995830437804 22.233958767662727 24 20.684364141765116 32.20236275191105 25.822747278202456 21.290525828121382 25 23.033958767662728 31.357702107945336 22.946675932360435 22.661663192031504 26 23.666620338197824 30.461338892749595 23.82450776001853 22.04753300903405 27 21.424137132267777 30.260458651841553 25.354829742877 22.96057447301367 28 23.137549223998146 30.392216817234193 25.008292795923094 21.461941162844568 29 22.297336113041464 32.392680101922636 24.423627519110493 20.88635626592541 30 24.111373639101227 29.386518415566364 24.968079684966412 21.534028260365996 31 24.996432707899004 30.07403289321288 23.718322909427844 21.211211489460275 32 23.200185313875377 29.696548529071116 25.083900857076674 22.019365299976837 33 22.749501968959926 29.23270789900394 25.2668056520732 22.750984479962938 34 23.67551540421589 29.170257123002084 26.180588371554318 20.973639101227704 35 23.45962473940236 28.21737317581654 26.344035209636324 21.978966875144774 36 23.721287931433864 30.975028955293027 24.626360898772294 20.67732221450081 37 23.144961779013205 31.191475561732684 23.895668288163076 21.767894371091035 38 23.33861477878156 30.779337502895533 25.664489228630995 20.217558489691918 39 23.07769284225156 28.752374334028257 24.799629372249246 23.370303451470928 40 23.958489691915684 29.86240444753301 24.664720870975216 21.514384989576094 41 21.767523743340284 28.46977067407922 27.47797081306463 22.284734769515868 42 23.311558952976604 29.7995830437804 24.78869585360204 22.100162149640955 43 22.200602270094976 27.81672457725272 26.62515635858235 23.357516794069955 44 23.241139680333564 27.09437109103544 26.101644660643963 23.562844567987028 45 23.588788510539725 26.79064164929349 27.36882094046792 22.251748899698864 46 21.68839471855455 28.579661802177437 27.455918461894836 22.276025017373176 47 22.996895992587447 28.966967801714155 26.702246930738937 21.333889274959464 48 21.549038684271483 28.264628214037522 27.862497104470695 22.323835997220293 49 22.172063933287006 28.741996757007183 26.993375028955292 22.09256428075052 50 21.59073430623118 27.946444290016213 27.11271716469771 23.3501042390549 51 22.606810284920083 26.447440352096365 27.788000926569378 23.157748436414177 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 13098.0 1 9840.0 2 6582.0 3 4078.0 4 1574.0 5 1346.5 6 1119.0 7 1198.0 8 1277.0 9 1371.5 10 1466.0 11 1614.0 12 1762.0 13 1877.5 14 1993.0 15 1899.5 16 1806.0 17 1796.0 18 1786.0 19 1916.5 20 2047.0 21 2079.0 22 2111.0 23 2188.0 24 2265.0 25 2561.0 26 4305.5 27 5754.0 28 7444.5 29 9135.0 30 9635.5 31 10136.0 32 10595.5 33 11055.0 34 13031.0 35 15007.0 36 16646.5 37 18286.0 38 18544.5 39 18803.0 40 19706.5 41 20610.0 42 21760.5 43 22911.0 44 25979.5 45 29048.0 46 32620.0 47 36192.0 48 38669.0 49 41146.0 50 40224.5 51 39303.0 52 37890.0 53 36477.0 54 34062.5 55 31648.0 56 29054.0 57 26460.0 58 26136.5 59 25813.0 60 22654.0 61 19495.0 62 19482.0 63 19469.0 64 17414.5 65 15360.0 66 14828.5 67 14297.0 68 12085.0 69 9873.0 70 8459.5 71 7046.0 72 6434.0 73 5822.0 74 4755.5 75 2788.0 76 1887.0 77 1595.5 78 1304.0 79 1044.5 80 785.0 81 591.0 82 397.0 83 364.5 84 332.0 85 280.5 86 229.0 87 151.0 88 73.0 89 49.0 90 25.0 91 16.5 92 8.0 93 6.0 94 4.0 95 3.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 539625.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.37994587659272 #Duplication Level Percentage of deduplicated Percentage of total 1 77.93711391571091 19.001026190428732 2 8.701499306449241 4.242841642728832 3 3.1171697279163655 2.2798928776426273 4 1.6692284822736856 1.6278280021399787 5 1.0805100657436226 1.317138846097158 6 0.7189922114274107 1.0517394720175188 7 0.5170475120378616 0.8823913251376991 8 0.4001443471752606 0.7804398021565905 9 0.3367499139351906 0.7388950208118483 >10 3.5927079601931604 21.07056149710911 >50 1.3897397205027409 24.15007583858086 >100 0.5322244973573683 18.73718237099499 >500 0.0030543730120939356 0.5972128987486406 >1k 0.0030543730120939356 1.3807755829235249 >5k 0.0 0.0 >10k+ 7.635932530234839E-4 2.1419986324818763 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 11506 2.132221450081075 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2606 0.48292795923094745 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1969 0.3648830206161686 No Hit CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGCT 1737 0.32189020152883946 Illumina Single End Adapter 1 (95% over 23bp) TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1105 0.20477183229094278 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGT 963 0.17845726198749132 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCC 869 0.16103775770210793 No Hit AATCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCT 750 0.13898540653231412 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 626 0.11600648598563817 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3863794301598332 0.0 2 0.0 0.0 0.0 0.5101690989112809 0.0 3 0.0 0.0 0.0 0.6773222145008108 0.0 4 0.0 0.0 0.0 1.3679870280287236 0.0 5 0.0 0.0 0.0 1.4758397034977995 0.0 6 0.0 0.0 0.0 2.116469770674079 0.0 7 0.0 0.0 0.0 2.5747509844799628 0.0 8 0.0 0.0 0.0 2.977067407922168 0.0 9 0.0 0.0 0.0 3.6629140606902943 0.0 10 0.0 0.0 0.0 4.420477183229094 0.0 11 0.0 0.0 0.0 5.222700949733611 0.0 12 0.0 0.0 0.0 5.550891823025249 0.0 13 0.0 0.0 0.0 5.700440120454019 0.0 14 0.0 0.0 0.0 5.875932360435487 0.0 15 0.0 0.0 0.0 6.01658559184619 0.0 16 0.0 0.0 0.0 6.30789900393792 0.0 17 0.0 0.0 0.0 6.662775075283762 0.0 18 0.0 0.0 0.0 7.158675005791059 0.0 19 0.0 0.0 0.0 7.3593699328237205 0.0 20 0.0 0.0 0.0 7.5913829047949966 0.0 21 0.0 0.0 0.0 7.843595089182302 0.0 22 0.0 0.0 0.0 8.1045170257123 0.0 23 0.0 0.0 0.0 8.385823488533704 0.0 24 0.0 0.0 0.0 8.590780634700023 0.0 25 0.0 0.0 0.0 8.77201760481816 0.0 26 0.0 0.0 0.0 8.930831596015752 0.0 27 0.0 0.0 0.0 9.127820245540885 0.0 28 0.0 0.0 0.0 9.314246004169561 0.0 29 0.0 0.0 0.0 9.511790595320825 0.0 30 0.0 0.0 0.0 9.777901320361362 0.0 31 0.0 0.0 0.0 9.965068334491544 0.0 32 0.0 0.0 0.0 10.167060458651841 0.0 33 0.0 0.0 0.0 10.373870743571924 0.0 34 0.0 0.0 0.0 10.550845494556405 0.0 35 0.0 0.0 0.0 10.749872596710679 0.0 36 0.0 0.0 0.0 10.93815149409312 0.0 37 0.0 0.0 0.0 11.122538800092657 0.0 38 0.0 0.0 0.0 11.325272179754458 0.0 39 0.0 0.0 0.0 11.529673384294648 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTC 25 3.8880447E-5 45.000004 22 AGCGTAA 30 2.1633532E-6 45.000004 13 CGCGGAA 30 2.1633532E-6 45.000004 40 TAGACAG 25 3.8880447E-5 45.000004 1 CATGACG 30 2.1633532E-6 45.000004 1 ATTACCG 25 3.8880447E-5 45.000004 1 TCGATAG 30 2.1633532E-6 45.000004 1 TAGCCCG 25 3.8880447E-5 45.000004 1 CTGCGTT 25 3.8880447E-5 45.000004 24 CATTAAG 25 3.8880447E-5 45.000004 29 ACGATAC 30 2.1633532E-6 45.000004 24 ATATCCG 25 3.8880447E-5 45.000004 1 GTTCGCT 30 2.1633532E-6 45.000004 19 GAAACGT 25 3.8880447E-5 45.000004 13 AACGCCA 25 3.8880447E-5 45.000004 14 GAACGTT 25 3.8880447E-5 45.000004 21 TCATCGG 25 3.8880447E-5 45.000004 31 ATTGGGC 50 2.1827873E-11 45.000004 4 AGGATAC 25 3.8880447E-5 45.000004 28 TAGTGCG 30 2.1633532E-6 45.000004 1 >>END_MODULE