SRR3553263_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553263_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	533840
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	11548	2.1631949647834556	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2556	0.47879514461261796	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1935	0.3624681552525101	No Hit
CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGCT	1645	0.30814476247564815	Illumina Single End Adapter 1 (95% over 23bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1074	0.20118387531844745	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGT	873	0.16353214446276038	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCC	821	0.15379139817173684	No Hit
AATCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCT	725	0.13580848194215495	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	643	0.12044807432938709	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATAC	20	7.0298894E-4	45.0	39
CTTCGAT	20	7.0298894E-4	45.0	24
GATACTA	20	7.0298894E-4	45.0	9
TCGCATA	25	3.887988E-5	45.0	37
GGTACGT	25	3.887988E-5	45.0	8
TCCGCGA	20	7.0298894E-4	45.0	23
TCCGCAC	25	3.887988E-5	45.0	31
ATCTAGA	25	3.887988E-5	45.0	21
GTCGACA	35	1.210301E-7	45.0	23
GTTTCGT	20	7.0298894E-4	45.0	11
ACGTTCC	20	7.0298894E-4	45.0	10
GACACGT	35	1.210301E-7	45.0	9
CGGTTAG	20	7.0298894E-4	45.0	1
GGCCGTA	25	3.887988E-5	45.0	42
CGCATAG	75	0.0	45.0	1
ATTACCG	20	7.0298894E-4	45.0	1
ACCGAAT	20	7.0298894E-4	45.0	17
CGCGCCA	20	7.0298894E-4	45.0	33
CGACCAT	20	7.0298894E-4	45.0	25
GCGCCAA	20	7.0298894E-4	45.0	34