SRR3553262_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553262_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	681230
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19090	2.8022841037535047	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4822	0.7078372943058878	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3446	0.5058497130190978	No Hit
CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT	2911	0.42731529732982987	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2056	0.3018070255273549	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGT	1824	0.26775097984527985	No Hit
GGTGTAGGGATTGAGAATATTTGAATCTACGTTTTATTAGGGATATTGGCC	1659	0.24353008528690748	No Hit
AATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT	1497	0.21974957062959646	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCC	1420	0.20844648650235603	No Hit
ACTGCAGGGACCATCCCCAAGGAGACATAAAAAAGAGAAGAAGAAAGATAA	1221	0.17923461973195542	No Hit
AAACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT	828	0.1215448526929231	No Hit
AAAAACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTT	697	0.10231493034657897	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTACG	35	1.2109558E-7	45.000004	15
CTCGTGG	35	1.2109558E-7	45.000004	2
GACCGTT	35	1.2109558E-7	45.000004	9
TAGCGAT	35	1.2109558E-7	45.000004	45
ATTCGCG	35	1.2109558E-7	45.000004	1
CCGTAGT	35	1.2109558E-7	45.000004	27
CGTAGTG	35	1.2109558E-7	45.000004	28
CGTAGAC	35	1.2109558E-7	45.000004	37
TACGTCG	35	1.2109558E-7	45.000004	1
AGGTACG	45	3.8380676E-10	45.0	6
GCCCATA	25	3.8891274E-5	45.0	36
TCGCAAT	40	6.8084773E-9	45.0	29
ACACGCC	20	7.031261E-4	45.0	25
GCGACAT	25	3.8891274E-5	45.0	34
TTGGACG	20	7.031261E-4	45.0	39
TACCACG	50	2.1827873E-11	45.0	1
ACGCATT	20	7.031261E-4	45.0	15
CTATCCG	45	3.8380676E-10	45.0	1
CGGCCGA	20	7.031261E-4	45.0	34
CGTTGTA	20	7.031261E-4	45.0	20