##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553262_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 681230 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.539350880025836 31.0 31.0 34.0 30.0 34.0 2 31.742031325690295 31.0 31.0 34.0 30.0 34.0 3 31.93201708674016 33.0 31.0 34.0 30.0 34.0 4 35.66000469738561 37.0 35.0 37.0 33.0 37.0 5 35.400521116216254 37.0 35.0 37.0 33.0 37.0 6 34.02222010187455 37.0 35.0 37.0 32.0 37.0 7 34.8969305520896 37.0 35.0 37.0 32.0 37.0 8 35.592567855203086 37.0 35.0 37.0 32.0 37.0 9 37.27209752946875 39.0 37.0 39.0 34.0 39.0 10 36.627200798555556 38.0 35.0 39.0 32.0 39.0 11 36.62018701466465 39.0 35.0 39.0 32.0 39.0 12 36.66884458993292 39.0 35.0 39.0 32.0 39.0 13 36.659338255802005 39.0 35.0 39.0 32.0 39.0 14 37.79427212542019 39.0 37.0 41.0 33.0 41.0 15 37.79299502370712 39.0 37.0 41.0 33.0 41.0 16 37.6814100964432 39.0 37.0 41.0 32.0 41.0 17 37.63070035083599 39.0 36.0 41.0 32.0 41.0 18 37.50785637743493 39.0 36.0 40.0 32.0 41.0 19 37.42452622462311 39.0 36.0 41.0 32.0 41.0 20 37.309541564522995 39.0 35.0 40.0 32.0 41.0 21 37.28740219896364 39.0 35.0 40.0 32.0 41.0 22 37.24944732322417 39.0 35.0 40.0 32.0 41.0 23 37.07333499699074 39.0 35.0 40.0 32.0 41.0 24 36.85431792492991 39.0 35.0 40.0 31.0 41.0 25 36.90752609250914 39.0 35.0 40.0 31.0 41.0 26 36.83019684981578 39.0 35.0 40.0 31.0 41.0 27 36.8052273094256 39.0 35.0 40.0 31.0 41.0 28 36.692396107041674 39.0 35.0 40.0 31.0 41.0 29 36.587364032705544 39.0 35.0 40.0 31.0 41.0 30 36.559756616708015 39.0 35.0 40.0 30.0 41.0 31 36.43757761695756 38.0 35.0 40.0 30.0 41.0 32 36.34690633119504 38.0 35.0 40.0 30.0 41.0 33 36.227763016895906 38.0 35.0 40.0 30.0 41.0 34 36.171624855041614 38.0 35.0 40.0 30.0 41.0 35 36.05714956769373 38.0 35.0 40.0 30.0 41.0 36 36.01963507185532 38.0 35.0 40.0 30.0 41.0 37 35.97297535340487 38.0 35.0 40.0 30.0 41.0 38 35.86321947066336 38.0 35.0 40.0 29.0 41.0 39 35.782816376260584 38.0 35.0 40.0 29.0 41.0 40 35.67196835136444 38.0 35.0 40.0 28.0 41.0 41 35.61833007941517 38.0 35.0 40.0 28.0 41.0 42 35.55985496821925 38.0 34.0 40.0 28.0 41.0 43 35.50064295465555 38.0 34.0 40.0 28.0 41.0 44 35.3540243383292 38.0 34.0 40.0 27.0 41.0 45 35.15502546863761 38.0 34.0 40.0 26.0 41.0 46 34.96936717408217 38.0 34.0 40.0 26.0 41.0 47 34.88548654639402 37.0 34.0 40.0 26.0 41.0 48 34.765484491287815 37.0 33.0 40.0 25.0 41.0 49 34.61175667542533 37.0 33.0 40.0 24.0 41.0 50 34.52172100465335 37.0 33.0 40.0 24.0 41.0 51 33.361287670830706 36.0 32.0 39.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 6.0 11 3.0 12 10.0 13 14.0 14 19.0 15 24.0 16 99.0 17 180.0 18 446.0 19 853.0 20 1307.0 21 2102.0 22 2864.0 23 3739.0 24 4575.0 25 5146.0 26 6180.0 27 7409.0 28 9215.0 29 11802.0 30 14951.0 31 19436.0 32 25123.0 33 33328.0 34 47697.0 35 68155.0 36 71687.0 37 92198.0 38 128696.0 39 123946.0 40 19.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.79258106660012 34.829939961540155 20.287861661993748 25.08961730986598 2 21.425803326336183 35.25696167226928 18.614418037960746 24.702816963433786 3 20.486766583973107 35.428122660481776 19.052889626117462 25.03222112942765 4 19.252968894499656 35.136884752579896 19.132304801608853 26.4778415513116 5 17.014517857404986 39.16665443389164 17.06721665223199 26.75161105647138 6 18.07598021226311 42.80977056207155 17.727933297124316 21.386315928541023 7 81.71278422852781 10.737342747676996 4.16966369654889 3.3802093272463045 8 83.42630242355739 9.609529821058967 3.2331224402918255 3.7310453150918197 9 76.44011567312067 14.210178647446531 5.8702640811473366 3.4794415982854545 10 29.73415733305932 46.456703316060654 11.378682676922624 12.4304566739574 11 19.163718567884562 31.29442332251956 32.98827121530174 16.553586894294146 12 23.146514393083102 28.49610263787561 31.34888363695081 17.008499332090484 13 23.07370491610763 30.365662111181248 27.602571818622195 18.958061154088927 14 17.89924107863717 32.70173069301117 30.53462119988844 18.86440702846322 15 17.126521145574916 35.597228542489326 27.772852047032575 19.50339826490319 16 18.832993262187514 34.57995097103768 27.17540331459272 19.411652452182082 17 18.920188482597656 33.62755603834241 28.397457540037873 19.054797939022063 18 19.365852942471705 32.10868575958193 27.49673384906713 21.028727448879234 19 18.23627849624943 35.806702582094154 26.870513629757937 19.08650529189848 20 19.96858623372429 34.83992190596421 27.21474391908753 17.976747941223962 21 19.896363929950237 34.17318673575738 27.113016161942372 18.817433172350015 22 19.643292280140333 32.67428034584501 26.72694978201195 20.9554775920027 23 18.806130088222773 34.50890301366646 25.61308221892753 21.071884679183242 24 16.980755398323623 35.91562321095665 27.791935176078564 19.311686214641163 25 18.57830688607372 35.347973518488615 26.170749966971506 19.902969628466156 26 19.67162338710861 35.22085052038225 24.35609118799818 20.75143490451096 27 16.712417245276924 34.534885427829074 26.475346065205585 22.277351261688416 28 17.67567488219838 35.78791303964887 27.498642161971727 19.037769916181023 29 18.734201371049426 33.894426258385565 25.73580141802328 21.635570952541727 30 20.447719566079 32.92250781674325 26.359085771325397 20.270686845852357 31 19.871409068890095 35.6195411241431 23.13682603525975 21.37222377170706 32 20.86079591327452 33.07531964241152 25.237878543223285 20.826005901090674 33 18.74491728197525 34.17303994245703 25.541447088354886 21.540595687212836 34 17.82055986964755 35.0924063825727 25.399791553513495 21.687242194266254 35 19.43646051994187 32.82914727771825 27.19316530393553 20.541226898404357 36 19.824288419476535 34.6738986832641 25.4096267046372 20.09218619262217 37 21.076288478193856 33.92231698545278 24.54721606505879 20.454178471294572 38 20.27509064486297 33.63137266415161 27.057087914507584 19.03644877647784 39 19.029255904760507 32.386271890550915 27.020976762620553 21.563495442068024 40 21.007736006928642 32.296434390734404 25.836208035465262 20.859621566871688 41 18.382925003302848 31.921671094931227 28.670493078695884 21.024910823070034 42 19.686889890345405 32.246965048515186 26.599679990605228 21.46646507053418 43 19.23329859225225 31.447528734788545 26.66162676335452 22.657545909604686 44 20.867254818490082 31.081573037006592 25.99650631945158 22.054665825051746 45 21.98449862748264 31.38235250943147 26.12289535105618 20.51025351202971 46 19.03644877647784 32.37687711932827 27.34039898419036 21.246275120003524 47 19.041880128590932 32.68954684908181 27.239698780147677 21.028874242179587 48 19.668247141200474 31.266239008851638 29.166360847290928 19.89915300265696 49 19.372458640987624 30.52728153487075 27.84155131159814 22.25870851254349 50 18.301014341705443 30.769050100553414 27.319701128840478 23.610234428900664 51 19.417670977496588 29.489599694669938 28.95747398088751 22.135255346945964 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 21797.0 1 16649.0 2 11501.0 3 6980.0 4 2459.0 5 2227.5 6 1996.0 7 2205.0 8 2414.0 9 2542.5 10 2671.0 11 3130.0 12 3589.0 13 4052.0 14 4515.0 15 4463.0 16 4411.0 17 4129.0 18 3847.0 19 4171.0 20 4495.0 21 4254.0 22 4013.0 23 4329.5 24 4646.0 25 5567.0 26 7808.0 27 9128.0 28 9950.0 29 10772.0 30 13545.5 31 16319.0 32 18675.5 33 21032.0 34 23570.0 35 26108.0 36 26930.0 37 27752.0 38 28019.5 39 28287.0 40 32271.5 41 36256.0 42 35480.0 43 34704.0 44 39918.5 45 45133.0 46 49712.5 47 54292.0 48 56941.5 49 59591.0 50 58128.5 51 56666.0 52 50645.0 53 44624.0 54 38237.5 55 31851.0 56 28256.5 57 24662.0 58 22183.0 59 19704.0 60 18164.5 61 16625.0 62 14479.5 63 12334.0 64 10553.0 65 8772.0 66 7243.5 67 5715.0 68 4655.0 69 3595.0 70 3093.0 71 2591.0 72 2521.5 73 2452.0 74 1878.0 75 1082.5 76 861.0 77 681.0 78 501.0 79 439.0 80 377.0 81 291.0 82 205.0 83 143.0 84 81.0 85 63.5 86 46.0 87 39.5 88 33.0 89 19.0 90 5.0 91 4.0 92 3.0 93 2.0 94 1.0 95 1.0 96 1.0 97 3.0 98 5.0 99 2.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 681230.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.914355436354793 #Duplication Level Percentage of deduplicated Percentage of total 1 76.17209486324151 19.739507406177754 2 9.790905960411292 5.074500342040458 3 3.700506492359169 2.8768872161260206 4 1.8931195495032984 1.9623589155736132 5 1.2197784771524471 1.5804886505272044 6 0.8314400842112423 1.2927740319769734 7 0.6161151179785911 1.1176358309906214 8 0.4818717936883699 0.9989917549115395 9 0.383238693038585 0.8938245337529365 >10 3.5970489678698607 20.372215249459554 >50 0.7635334394705092 14.1321683841715 >100 0.5404982541927049 23.31891853396532 >500 0.004055185186869169 0.6428353129623351 >1k 0.005213809525974646 3.1310073066656843 >5k 0.0 0.0 >10k+ 5.793121695527384E-4 2.8658865306984995 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 19090 2.8022841037535047 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4822 0.7078372943058878 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3446 0.5058497130190978 No Hit CTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCTGCT 2911 0.42731529732982987 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2056 0.3018070255273549 No Hit AATGATACCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGT 1824 0.26775097984527985 No Hit GGTGTAGGGATTGAGAATATTTGAATCTACGTTTTATTAGGGATATTGGCC 1659 0.24353008528690748 No Hit AATCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT 1497 0.21974957062959646 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCC 1420 0.20844648650235603 No Hit ACTGCAGGGACCATCCCCAAGGAGACATAAAAAAGAGAAGAAGAAAGATAA 1221 0.17923461973195542 No Hit AAACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTTCT 828 0.1215448526929231 No Hit AAAAACTGTCTCTTATACACATCTGACGCACGAGTCTTCGTATGCCGTCTT 697 0.10231493034657897 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.935866007075437E-4 0.0 0.0 0.5126022048353713 0.0 2 2.935866007075437E-4 0.0 0.0 0.735434434772397 0.0 3 2.935866007075437E-4 0.0 0.0 0.9973136826035259 0.0 4 2.935866007075437E-4 0.0 0.0 2.194559840288889 0.0 5 2.935866007075437E-4 0.0 0.0 2.3742348399219058 0.0 6 2.935866007075437E-4 0.0 0.0 3.354814086285102 0.0 7 2.935866007075437E-4 0.0 0.0 4.060743067686391 0.0 8 2.935866007075437E-4 0.0 0.0 4.520646477694758 0.0 9 2.935866007075437E-4 0.0 0.0 5.639211426390499 0.0 10 2.935866007075437E-4 0.0 0.0 7.0363900591577 0.0 11 2.935866007075437E-4 0.0 0.0 8.511075554511692 0.0 12 2.935866007075437E-4 0.0 0.0 9.162984601382792 0.0 13 2.935866007075437E-4 0.0 0.0 9.42750612862029 0.0 14 2.935866007075437E-4 0.0 0.0 9.736065645963919 0.0 15 2.935866007075437E-4 0.0 0.0 9.969466993526416 0.0 16 2.935866007075437E-4 0.0 0.0 10.421003185414618 0.0 17 2.935866007075437E-4 0.0 0.0 11.160988212497982 0.0 18 2.935866007075437E-4 0.0 0.0 11.955433554012595 0.0 19 2.935866007075437E-4 0.0 0.0 12.419447176430868 0.0 20 2.935866007075437E-4 0.0 0.0 12.795678405237584 0.0 21 2.935866007075437E-4 0.0 0.0 13.229305814482627 0.0 22 2.935866007075437E-4 0.0 0.0 13.7088795267384 0.0 23 2.935866007075437E-4 0.0 0.0 14.179792434273299 0.0 24 2.935866007075437E-4 0.0 0.0 14.49187499082542 0.0 25 2.935866007075437E-4 0.0 0.0 14.793094843151358 0.0 26 2.935866007075437E-4 0.0 0.0 15.084479544353595 0.0 27 2.935866007075437E-4 0.0 0.0 15.40023193341456 0.0 28 2.935866007075437E-4 0.0 0.0 15.691176254715735 0.0 29 2.935866007075437E-4 0.0 0.0 16.041425069359835 0.0 30 2.935866007075437E-4 0.0 0.0 16.42264727037858 0.0 31 4.403799010613156E-4 0.0 0.0 16.72474788250664 0.0 32 4.403799010613156E-4 0.0 0.0 17.04490407057822 0.0 33 4.403799010613156E-4 0.0 0.0 17.362271185943072 0.0 34 4.403799010613156E-4 0.0 0.0 17.660555172261937 0.0 35 4.403799010613156E-4 0.0 0.0 17.993482377464293 0.0 36 4.403799010613156E-4 0.0 0.0 18.294408643189524 0.0 37 4.403799010613156E-4 0.0 0.0 18.62117052977702 0.0 38 4.403799010613156E-4 0.0 0.0 18.9667219588098 0.0 39 4.403799010613156E-4 0.0 0.0 19.314034907446825 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTTACG 35 1.2109558E-7 45.000004 15 CTCGTGG 35 1.2109558E-7 45.000004 2 GACCGTT 35 1.2109558E-7 45.000004 9 TAGCGAT 35 1.2109558E-7 45.000004 45 ATTCGCG 35 1.2109558E-7 45.000004 1 CCGTAGT 35 1.2109558E-7 45.000004 27 CGTAGTG 35 1.2109558E-7 45.000004 28 CGTAGAC 35 1.2109558E-7 45.000004 37 TACGTCG 35 1.2109558E-7 45.000004 1 AGGTACG 45 3.8380676E-10 45.0 6 GCCCATA 25 3.8891274E-5 45.0 36 TCGCAAT 40 6.8084773E-9 45.0 29 ACACGCC 20 7.031261E-4 45.0 25 GCGACAT 25 3.8891274E-5 45.0 34 TTGGACG 20 7.031261E-4 45.0 39 TACCACG 50 2.1827873E-11 45.0 1 ACGCATT 20 7.031261E-4 45.0 15 CTATCCG 45 3.8380676E-10 45.0 1 CGGCCGA 20 7.031261E-4 45.0 34 CGTTGTA 20 7.031261E-4 45.0 20 >>END_MODULE