SRR3553259_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553259_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	968293
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	20528	2.120019456920581	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4782	0.49385878034851016	No Hit
CTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCTGCT	3326	0.3434910714009086	Illumina PCR Primer Index 8 (95% over 21bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3282	0.3389469922843602	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGT	2517	0.25994198037164373	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCC	2366	0.2443475270398526	No Hit
AATCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTCT	2231	0.23040546611407914	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2031	0.2097505610388591	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTCGCG	45	3.8380676E-10	45.000004	21
CGCATTG	45	3.8380676E-10	45.000004	12
CTTGACG	45	3.8380676E-10	45.000004	1
TCGCGGA	45	3.8380676E-10	45.000004	23
TCGCGCG	45	3.8380676E-10	45.000004	1
CGGACAA	35	1.2116652E-7	45.0	37
AGTCCCG	20	7.032737E-4	45.0	1
CGAACCG	20	7.032737E-4	45.0	1
AGTCACG	35	1.2116652E-7	45.0	1
CTCCGCA	20	7.032737E-4	45.0	20
ACTTGCG	35	1.2116652E-7	45.0	1
CCCTACG	20	7.032737E-4	45.0	32
GACGTAC	20	7.032737E-4	45.0	9
CGTTGAC	50	2.1827873E-11	45.0	43
ATTCGTC	35	1.2116652E-7	45.0	37
TCCTCGA	20	7.032737E-4	45.0	26
TTCCGTC	40	6.8139343E-9	45.0	40
ATTCGAT	20	7.032737E-4	45.0	11
TCGATTG	20	7.032737E-4	45.0	13
TAACGCG	20	7.032737E-4	45.0	1