##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553257_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 831314 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.483325193609154 31.0 31.0 34.0 30.0 34.0 2 31.699081213596788 31.0 31.0 34.0 30.0 34.0 3 31.88270015902535 33.0 31.0 34.0 30.0 34.0 4 35.6317083556875 37.0 35.0 37.0 33.0 37.0 5 35.38665414031281 37.0 35.0 37.0 33.0 37.0 6 32.57336096829838 37.0 35.0 37.0 26.0 37.0 7 34.20307609399096 37.0 35.0 37.0 28.0 37.0 8 35.31871591239892 37.0 35.0 37.0 32.0 37.0 9 37.166831065036796 39.0 37.0 39.0 34.0 39.0 10 36.55623867756347 38.0 35.0 39.0 32.0 39.0 11 36.63857339104117 39.0 35.0 39.0 32.0 39.0 12 36.708481993566814 39.0 35.0 39.0 32.0 39.0 13 36.70069913414185 39.0 35.0 39.0 32.0 39.0 14 37.83264085532061 39.0 37.0 41.0 33.0 41.0 15 37.858242493209545 40.0 37.0 41.0 33.0 41.0 16 37.7873041955266 39.0 37.0 41.0 33.0 41.0 17 37.77171201254881 39.0 37.0 41.0 33.0 41.0 18 37.62582008723539 39.0 37.0 41.0 33.0 41.0 19 37.544494619361636 39.0 36.0 41.0 32.0 41.0 20 37.4390723601431 39.0 36.0 41.0 32.0 41.0 21 37.387805329875356 39.0 36.0 40.0 32.0 41.0 22 37.315852974928845 39.0 36.0 40.0 32.0 41.0 23 37.16740846419042 39.0 35.0 40.0 32.0 41.0 24 37.02457434856144 39.0 35.0 40.0 31.0 41.0 25 37.065532398107095 39.0 35.0 40.0 31.0 41.0 26 36.96227779154447 39.0 35.0 40.0 31.0 41.0 27 36.907065200393596 39.0 35.0 40.0 31.0 41.0 28 36.83892488277594 39.0 35.0 40.0 31.0 41.0 29 36.65389130942099 39.0 35.0 40.0 31.0 41.0 30 36.6486850937191 39.0 35.0 40.0 31.0 41.0 31 36.248927601363626 38.0 35.0 40.0 30.0 41.0 32 36.35908453364192 38.0 35.0 40.0 30.0 41.0 33 36.31524309707283 38.0 35.0 40.0 30.0 41.0 34 36.26677765561509 38.0 35.0 40.0 30.0 41.0 35 36.25110367442387 38.0 35.0 40.0 30.0 41.0 36 36.15497272991914 38.0 35.0 40.0 30.0 41.0 37 36.05342024794482 38.0 35.0 40.0 30.0 41.0 38 35.94302634143055 38.0 35.0 40.0 30.0 41.0 39 35.8601767803742 38.0 35.0 40.0 29.0 41.0 40 35.710988868225485 38.0 35.0 40.0 28.0 41.0 41 35.662814532174366 38.0 35.0 40.0 28.0 41.0 42 35.546474617292624 38.0 34.0 40.0 28.0 41.0 43 35.483213322523135 38.0 34.0 40.0 28.0 41.0 44 35.311551351234314 38.0 34.0 40.0 27.0 41.0 45 35.141304007871874 38.0 34.0 40.0 26.0 41.0 46 34.837315382635204 37.0 33.0 40.0 25.0 41.0 47 34.826762210187724 37.0 33.0 40.0 25.0 41.0 48 34.815199792136305 37.0 33.0 40.0 26.0 41.0 49 34.63896193255497 37.0 33.0 40.0 26.0 41.0 50 34.5354799750756 37.0 33.0 40.0 25.0 41.0 51 33.45117849573086 35.0 32.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 3.0 10 4.0 11 6.0 12 6.0 13 4.0 14 19.0 15 38.0 16 85.0 17 225.0 18 447.0 19 901.0 20 1482.0 21 2219.0 22 3093.0 23 4157.0 24 5241.0 25 6354.0 26 7328.0 27 8985.0 28 11187.0 29 14393.0 30 18152.0 31 23900.0 32 31309.0 33 41741.0 34 58486.0 35 83960.0 36 93314.0 37 117775.0 38 153010.0 39 143461.0 40 26.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.548192379774672 33.433696533439836 20.409375999923014 25.608735086862485 2 21.31781733496609 33.25554483624719 20.108887857055215 25.3177499717315 3 20.067267001397788 34.629033072942356 20.50067724109061 24.80302268456925 4 19.00040177357773 35.96559182210332 19.167967819620504 25.86603858469844 5 17.567730123635595 38.21504269144992 16.835154947468705 27.382072237445776 6 17.15019836066757 45.858243696124454 17.092578736795 19.89897920641298 7 83.9243655225342 9.388269655028065 3.519488424349885 3.167876398087847 8 84.92759655196473 9.057347765104401 2.991168198779282 3.023887484151596 9 77.71179121246605 13.563226410237286 5.756789853172207 2.9681925241244587 10 27.546390413249387 48.06222438212276 11.427691582242089 12.963693622385767 11 18.341926155459912 33.0650031155496 31.789913317952063 16.803157411038427 12 23.268343850819306 28.125353356252873 31.026062354296936 17.580240438630888 13 22.839865562230397 30.32740937840575 27.918692575849803 18.914032483514053 14 18.636760598281757 33.71481774636298 27.522091532200825 20.12633012315443 15 17.145266409563657 36.438457670627464 27.333715058329343 19.082560861479536 16 19.922315755538822 33.85255150280159 26.61954448018438 19.60558826147521 17 18.366225036508467 33.16207834825349 28.77709265091169 19.694603964326355 18 19.041180588802785 34.35585109838159 26.973802919233886 19.629165393581726 19 18.3913659579894 36.89147542324561 26.610883492879942 18.106275125885045 20 19.486018520077852 35.55720221240109 27.083027592462056 17.873751675059 21 19.76292953083913 35.65764560683448 26.508274851620445 18.071150010705942 22 18.996672737377214 33.78566943417289 25.37885804882391 21.83879977962599 23 18.082096536326826 36.98963327936255 24.98875274565327 19.939517438657354 24 16.91166033532456 36.848531361194446 27.37196775225727 18.867840551223725 25 19.45666739643504 36.233841845560164 24.043983380527695 20.265507377477103 26 19.108664114883183 36.46023043037889 23.50616012722028 20.92494532751764 27 17.772586531683576 35.64537587481986 25.171355227988464 21.410682365508098 28 18.82200949340442 35.4488195796053 27.74884099149058 17.980329935499704 29 18.19589228618789 35.47143437978911 24.870025044688287 21.462648289334716 30 20.06654525245575 35.10165833848582 25.935085900153254 18.89671050890518 31 19.608475257243352 35.63623372155407 23.949554560611272 20.805736460591305 32 20.965844434233034 35.2781259548137 23.123152021979664 20.6328775889736 33 19.197318943263316 34.316876655511635 25.690052134331914 20.795752266893135 34 17.379834815725467 34.298832931960725 26.47230769600897 21.849024556304837 35 19.078711533788674 33.49059440837036 26.37908179099594 21.05161226684502 36 20.69615091289212 35.16384903899129 25.193488862210913 18.94651118590569 37 18.32015339570848 35.92060280471639 25.666595293715734 20.092648505859398 38 17.832251110891914 34.944557652102574 27.719128993376753 19.504062243628763 39 17.519733818990176 33.884549039231864 26.85712017360468 21.738596968173276 40 19.074020165665438 35.53627149308204 26.3358971459641 19.05381119528842 41 18.24581325467874 33.66345327998806 28.272830723408966 19.817902741924232 42 19.09952196161739 35.61530300223502 24.520698556742698 20.764476479404895 43 17.95278318421198 34.72827355247235 25.181219130196293 22.137724133119374 44 20.087716554755485 32.761026519461964 25.90717827439451 21.244078651388044 45 19.824759356873574 33.690879739785444 26.781336534690865 19.703024368650112 46 18.4548798648886 34.79539620408173 26.754872406816197 19.994851524213473 47 18.913431026062355 35.52508438448047 25.93532648313393 19.626158106323246 48 18.824174740230525 33.83258311540525 27.151232867484488 20.192009276879734 49 18.846188082962634 34.55168564465412 25.854370310135522 20.74775596224772 50 17.95278318421198 32.01485840488672 27.628790084131865 22.403568326769427 51 18.073074674551375 32.53223210483644 27.963681593236732 21.431011627375458 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 24979.0 1 18948.5 2 12918.0 3 8068.5 4 3219.0 5 2945.0 6 2671.0 7 2793.5 8 2916.0 9 3844.5 10 4773.0 11 5729.5 12 6686.0 13 7158.0 14 7630.0 15 7711.5 16 7793.0 17 7606.0 18 7419.0 19 7442.0 20 7465.0 21 6961.0 22 6457.0 23 6727.5 24 6998.0 25 7534.5 26 9185.5 27 10300.0 28 12746.5 29 15193.0 30 17975.5 31 20758.0 32 22287.0 33 23816.0 34 29416.5 35 35017.0 36 35703.0 37 36389.0 38 38019.0 39 39649.0 40 38008.0 41 36367.0 42 40188.0 43 44009.0 44 46623.0 45 49237.0 46 56530.0 47 63823.0 48 68212.0 49 72601.0 50 69588.0 51 66575.0 52 59483.5 53 52392.0 54 45767.0 55 39142.0 56 35122.5 57 31103.0 58 26848.0 59 22593.0 60 20146.5 61 17700.0 62 15638.0 63 13576.0 64 11909.5 65 10243.0 66 8337.5 67 6432.0 68 5326.0 69 4220.0 70 3632.0 71 3044.0 72 2972.0 73 2900.0 74 2390.0 75 1399.0 76 918.0 77 749.5 78 581.0 79 445.5 80 310.0 81 293.5 82 277.0 83 228.5 84 180.0 85 120.0 86 60.0 87 38.5 88 17.0 89 12.0 90 7.0 91 6.0 92 5.0 93 4.5 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 831314.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.886120990187262 #Duplication Level Percentage of deduplicated Percentage of total 1 74.62483059246856 20.063722241813373 2 9.971386998196667 5.3618383454699154 3 3.8782580338253316 3.1281394418578095 4 2.0906325379267674 2.248359974428853 5 1.3438625817730125 1.806562598386732 6 0.9366511608403312 1.5109749861571498 7 0.7104860305640525 1.33715493657081 8 0.5932674429390629 1.2760528200318928 9 0.47308651726849493 1.1447515207896364 >10 4.2309336968689975 23.63102058892635 >50 0.6874203009749758 12.928332323597013 >100 0.45195286058439976 20.329299819921225 >500 0.0049714814664283975 0.8080587428869715 >1k 0.0013558585817531994 1.1224118207589409 >5k 4.519528605843998E-4 0.6133955690366064 >10k+ 4.519528605843998E-4 2.6899242693667507 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 22137 2.6628927216430855 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5048 0.6072314432332429 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3880 0.4667309825168348 No Hit CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT 3310 0.3981648330233823 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2047 0.24623668072473215 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 850 0.10224776678848185 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.405829806787808E-4 0.0 0.0 0.4782789655894163 0.0 2 2.405829806787808E-4 0.0 0.0 0.6796469204175558 0.0 3 2.405829806787808E-4 0.0 0.0 0.8752408837094047 0.0 4 2.405829806787808E-4 0.0 0.0 1.6848026136935021 0.0 5 2.405829806787808E-4 0.0 0.0 1.8106275125885045 0.0 6 2.405829806787808E-4 0.0 0.0 2.6530288194352556 0.0 7 2.405829806787808E-4 0.0 0.0 3.2890099288596124 0.0 8 2.405829806787808E-4 0.0 0.0 3.8723033655153167 0.0 9 2.405829806787808E-4 0.0 0.0 4.760174855710357 0.0 10 2.405829806787808E-4 0.0 0.0 6.08374212391467 0.0 11 2.405829806787808E-4 0.0 0.0 7.175267107254299 0.0 12 2.405829806787808E-4 0.0 0.0 7.71369181801341 0.0 13 2.405829806787808E-4 0.0 0.0 7.944892062445718 0.0 14 2.405829806787808E-4 0.0 0.0 8.162499368469676 0.0 15 2.405829806787808E-4 0.0 0.0 8.37252831060225 0.0 16 2.405829806787808E-4 0.0 0.0 8.793789109770797 0.0 17 2.405829806787808E-4 0.0 0.0 9.388510238008744 0.0 18 2.405829806787808E-4 0.0 0.0 10.110379471535424 0.0 19 2.405829806787808E-4 0.0 0.0 10.452247887079972 0.0 20 2.405829806787808E-4 0.0 0.0 10.790988723875696 0.0 21 2.405829806787808E-4 0.0 0.0 11.186266561130932 0.0 22 4.811659613575616E-4 0.0 0.0 11.634352362645162 0.0 23 4.811659613575616E-4 0.0 0.0 12.11022549842779 0.0 24 4.811659613575616E-4 0.0 0.0 12.448966335223513 0.0 25 4.811659613575616E-4 0.0 0.0 12.732974543914814 0.0 26 4.811659613575616E-4 0.0 0.0 13.008081182321 0.0 27 4.811659613575616E-4 0.0 0.0 13.290164727166871 0.0 28 4.811659613575616E-4 0.0 0.0 13.599554440319784 0.0 29 4.811659613575616E-4 0.0 0.0 13.923379132313421 0.0 30 4.811659613575616E-4 0.0 0.0 14.325513584518005 0.0 31 6.014574516969521E-4 0.0 0.0 14.64609040627248 0.0 32 6.014574516969521E-4 0.0 0.0 14.94958583639876 0.0 33 6.014574516969521E-4 0.0 0.0 15.275816358199188 0.0 34 6.014574516969521E-4 0.0 0.0 15.586408986255494 0.0 35 6.014574516969521E-4 0.0 0.0 15.96015464673998 0.0 36 7.217489420363425E-4 0.0 0.0 16.28987362176025 0.0 37 8.420404323757328E-4 0.0 0.0 16.618269390386786 0.0 38 8.420404323757328E-4 0.0 0.0 16.950153612233162 0.0 39 8.420404323757328E-4 0.0 0.0 17.26652023182576 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATGACG 35 1.2113924E-7 45.000004 1 CGATTAG 35 1.2113924E-7 45.000004 42 CCGTCGT 35 1.2113924E-7 45.000004 41 CCCCGTC 35 1.2113924E-7 45.000004 11 GTATGCG 35 1.2113924E-7 45.000004 1 TTACGTC 35 1.2113924E-7 45.000004 11 TCGGTCA 35 1.2113924E-7 45.000004 34 GTGTTCG 20 7.03216E-4 45.0 42 CGTGGAC 25 3.8898703E-5 45.0 34 TCGCATA 20 7.03216E-4 45.0 21 ATCTCCG 40 6.8102963E-9 45.0 1 CGAGTAA 45 3.8380676E-10 45.0 30 GCGAATT 20 7.03216E-4 45.0 18 CTATCGG 20 7.03216E-4 45.0 2 GCGAAGT 20 7.03216E-4 45.0 23 TCCGAGT 20 7.03216E-4 45.0 17 GGGTCGA 20 7.03216E-4 45.0 7 ACCGCCG 25 3.8898703E-5 45.0 1 TAGCGTC 25 3.8898703E-5 45.0 32 CGGCATA 25 3.8898703E-5 45.0 35 >>END_MODULE