SRR3553256_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553256_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	663039
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	18192	2.7437300068321773	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4621	0.6969424121356361	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3483	0.5253084660178361	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1930	0.29108393322263093	No Hit
CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT	1893	0.2855035676634406	No Hit
GCCCCTGGGCTATATCTTTTATTTTGTTTTGGTTTAATATAACAGATAACC	1538	0.23196222243337117	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	870	0.13121400098636732	No Hit
CTACTTGGGGACTCCTAGGACTTTGATCTTTTAAAGGTTCCCTCCCCCATC	863	0.1301582561508448	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATAAGG	105	0.0	45.000004	2
TCACGGA	20	7.031125E-4	45.0	23
CCTTCGT	20	7.031125E-4	45.0	20
AGCGTTG	35	1.210883E-7	45.0	1
TAGAGTA	35	1.210883E-7	45.0	19
AGCGTAA	35	1.210883E-7	45.0	10
CGTGGAT	25	3.889014E-5	45.0	38
CGGAAAT	25	3.889014E-5	45.0	14
ACTATCG	35	1.210883E-7	45.0	1
AGTCCGT	40	6.8066583E-9	45.0	15
ACAGTCG	25	3.889014E-5	45.0	17
TACCCGT	25	3.889014E-5	45.0	37
TCGCAAT	20	7.031125E-4	45.0	10
CGAACGA	25	3.889014E-5	45.0	13
GATCGTA	20	7.031125E-4	45.0	20
ATTAGGC	20	7.031125E-4	45.0	41
GATCGCC	25	3.889014E-5	45.0	29
CAACGTA	25	3.889014E-5	45.0	17
ACTGATC	45	3.8380676E-10	45.0	11
CGAAACG	25	3.889014E-5	45.0	1