##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553256_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 663039 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.642639422417083 31.0 31.0 34.0 30.0 34.0 2 31.834088190890732 33.0 31.0 34.0 30.0 34.0 3 32.00852287723648 33.0 31.0 34.0 30.0 34.0 4 35.72987863459012 37.0 35.0 37.0 33.0 37.0 5 35.46994369863613 37.0 35.0 37.0 33.0 37.0 6 34.10249020042561 37.0 35.0 37.0 32.0 37.0 7 34.892786095538874 37.0 35.0 37.0 32.0 37.0 8 35.567455308058804 37.0 35.0 37.0 32.0 37.0 9 37.25373620556257 39.0 37.0 39.0 34.0 39.0 10 36.719628860444104 39.0 37.0 39.0 32.0 39.0 11 36.725998018216124 39.0 37.0 39.0 32.0 39.0 12 36.6245198246257 39.0 35.0 39.0 32.0 39.0 13 36.58577851378275 39.0 35.0 39.0 32.0 39.0 14 37.74080710184469 40.0 37.0 41.0 33.0 41.0 15 37.739359223213114 40.0 37.0 41.0 33.0 41.0 16 37.6653741333466 39.0 36.0 41.0 32.0 41.0 17 37.600643401066904 39.0 36.0 41.0 32.0 41.0 18 37.477469651106496 39.0 36.0 41.0 33.0 41.0 19 37.364269673427955 39.0 35.0 41.0 32.0 41.0 20 37.24071585532676 39.0 35.0 41.0 32.0 41.0 21 37.196418310235146 39.0 35.0 40.0 32.0 41.0 22 37.15940087988791 39.0 35.0 40.0 32.0 41.0 23 36.96919034928564 39.0 35.0 40.0 31.0 41.0 24 36.7787188988883 39.0 35.0 40.0 31.0 41.0 25 36.83752991905453 39.0 35.0 40.0 31.0 41.0 26 36.72477938703455 39.0 35.0 40.0 31.0 41.0 27 36.6585283821917 39.0 35.0 40.0 31.0 41.0 28 36.508504024650136 39.0 35.0 40.0 30.0 41.0 29 36.307185550171255 38.0 35.0 40.0 30.0 41.0 30 36.32379844926166 38.0 35.0 40.0 30.0 41.0 31 36.2382378713771 38.0 35.0 40.0 30.0 41.0 32 36.096688128450964 38.0 35.0 40.0 30.0 41.0 33 35.97379490497542 38.0 35.0 40.0 29.0 41.0 34 35.85415940842092 38.0 35.0 40.0 29.0 41.0 35 35.69424573818433 38.0 35.0 40.0 28.0 41.0 36 35.56788514702755 38.0 34.0 40.0 28.0 41.0 37 35.509980559212956 38.0 34.0 40.0 27.0 41.0 38 35.392470126191675 38.0 34.0 40.0 27.0 41.0 39 35.33333634974715 38.0 34.0 40.0 27.0 41.0 40 35.1721497528803 38.0 34.0 40.0 26.0 41.0 41 35.03778812407717 38.0 34.0 40.0 26.0 41.0 42 34.93573077903412 38.0 34.0 40.0 26.0 41.0 43 34.831795716390744 37.0 34.0 40.0 25.0 41.0 44 34.67115056580382 37.0 33.0 40.0 24.0 41.0 45 34.446994822325685 37.0 33.0 40.0 24.0 41.0 46 34.26516238109674 37.0 33.0 40.0 23.0 41.0 47 34.14768814504124 36.0 33.0 40.0 23.0 41.0 48 33.98594652803229 36.0 33.0 40.0 23.0 41.0 49 33.793613950310615 36.0 33.0 40.0 23.0 41.0 50 33.72985902790032 36.0 33.0 40.0 23.0 41.0 51 32.505415216902776 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 0.0 10 3.0 11 17.0 12 19.0 13 22.0 14 37.0 15 76.0 16 157.0 17 295.0 18 585.0 19 1121.0 20 1711.0 21 2399.0 22 3399.0 23 4332.0 24 5560.0 25 6362.0 26 7355.0 27 8518.0 28 10217.0 29 12686.0 30 15850.0 31 19360.0 32 25157.0 33 33221.0 34 48745.0 35 66919.0 36 66722.0 37 88370.0 38 118574.0 39 115231.0 40 18.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.99463379982173 31.8299526875493 19.964888943184338 26.210524569444633 2 23.69981252988135 33.90403882727864 19.059512336378404 23.33663630646161 3 21.009171406206875 33.67298152899 19.232503668713303 26.085343396089822 4 20.595017789300478 34.832641820466065 18.808999168977994 25.76334122125546 5 17.677391525988668 38.6544381250575 15.400300736457433 28.267869612496398 6 17.558394000956206 44.26164976720827 17.916593141579906 20.263363090255627 7 81.76985064226992 11.022428544927221 3.9358167468278635 3.271904065975003 8 83.05695441746262 10.707967404632306 3.250035065810608 2.985043112094462 9 77.17012121458919 13.45214987353685 5.553067014157538 3.824661897716424 10 35.17063098852405 36.18625752029669 12.481166266237732 16.16194522494152 11 25.20801943777063 33.0912661246171 22.923387613699948 18.77732682391232 12 25.4930705433617 29.07792754272373 26.353804225694116 19.075197688220452 13 24.90396492514015 29.36765408972926 25.095808843823665 20.63257214130692 14 21.031794509825215 31.424094208636294 26.061513726945172 21.48259755459332 15 18.598151843255074 33.46545225846443 27.30095816384858 20.63543773443191 16 20.39110821535385 30.62006910604052 26.66675715908114 22.322065519524493 17 20.768159942326168 31.70492233488528 26.660724331449583 20.86619339133897 18 21.620900128046767 31.058957316236302 25.18509469277071 22.135047862946223 19 20.909629750286182 33.23635562915605 24.315915051754118 21.538099568803645 20 22.522657038273767 31.305850787057775 25.448729260269758 20.7227629143987 21 22.89669235143031 31.708843672845788 24.41952886632611 20.974935109397787 22 21.462387582027603 30.760332348474222 23.987125945834258 23.790154123663918 23 21.823753957157873 32.697624121658 24.061782187774778 21.416839733409347 24 19.2135002616739 31.96463556442381 26.646999648587787 22.1748645253145 25 22.11468706968972 31.443851719129647 23.859531641426823 22.581929569753814 26 21.831898274460475 33.18432249083387 22.747681508930846 22.236097725774805 27 21.19377593173252 31.88877275695698 24.750731103298598 22.1667202080119 28 21.419102043771183 32.169450062515175 26.421371895167557 19.99007599854609 29 21.408695416106745 33.79876598510796 23.188077926034516 21.604460672750772 30 21.65392985932954 33.31010694695184 24.488001459944286 20.547961733774333 31 23.03861462146269 32.311372332547556 22.484650224194958 22.165362821794794 32 23.216432215902834 32.20745687659399 23.11704138067293 21.459069526830245 33 22.04500791054523 30.882044645940887 23.458650245309855 23.614297198204028 34 21.003591040647684 32.151502400311294 25.045133091718586 21.799773467322435 35 22.76955050909524 31.490606133274213 24.826292269383853 20.913551088246695 36 22.229009153307725 33.42714380300404 23.821072365275647 20.52277467841258 37 22.046365296762332 33.17859130458389 23.232117567744883 21.542925830908892 38 20.918980633115094 32.302775553172594 25.769826510959387 21.008417302752928 39 20.964076019660986 30.167757854364524 25.063834857376417 23.804331268598077 40 22.20698933245254 29.80427998956321 25.245724610467864 22.74300606751639 41 21.188044745482543 29.556179953215423 26.808679429113518 22.447095872188513 42 22.121624821466007 30.25975847574577 24.35950223139212 23.259114471396103 43 20.79681587357606 29.43959555923558 26.09831397549767 23.665274591690686 44 22.766081633207097 27.508789075755725 26.65966858661406 23.065460704423117 45 22.784029295410978 28.916700224270368 26.271154487141786 22.028115993176872 46 20.79063222525372 30.070176867424088 26.723918200890147 22.41527270643205 47 21.63462481090856 30.315562131337675 25.2724198727375 22.777393185016265 48 20.87599673624025 29.99159928752306 26.71290829046255 22.41949568577414 49 21.531312637718145 28.912024782855912 26.380801129345333 23.175861450080614 50 21.242189373475767 27.64588508368286 26.487883819805468 24.6240417230359 51 20.611004782524105 27.703046125491866 27.353292943552336 24.332656148431692 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 20799.0 1 15972.0 2 11145.0 3 6849.5 4 2554.0 5 2135.5 6 1717.0 7 1889.5 8 2062.0 9 2255.0 10 2448.0 11 2488.5 12 2529.0 13 2687.0 14 2845.0 15 2911.0 16 2977.0 17 2949.5 18 2922.0 19 2875.0 20 2828.0 21 2904.0 22 2980.0 23 3451.5 24 3923.0 25 4545.5 26 6454.0 27 7740.0 28 9262.5 29 10785.0 30 10935.5 31 11086.0 32 15932.5 33 20779.0 34 18313.0 35 15847.0 36 17948.0 37 20049.0 38 22249.0 39 24449.0 40 25729.0 41 27009.0 42 26512.0 43 26015.0 44 29498.0 45 32981.0 46 36425.0 47 39869.0 48 44033.5 49 48198.0 50 47846.0 51 47494.0 52 45359.0 53 43224.0 54 39437.0 55 35650.0 56 33699.5 57 31749.0 58 30478.5 59 29208.0 60 29116.5 61 29025.0 62 25050.0 63 21075.0 64 20645.0 65 20215.0 66 16906.5 67 13598.0 68 11986.0 69 10374.0 70 9683.5 71 8993.0 72 8074.5 73 7156.0 74 5917.5 75 4783.5 76 4888.0 77 3255.5 78 1623.0 79 1314.0 80 1005.0 81 796.5 82 588.0 83 440.5 84 293.0 85 278.0 86 263.0 87 218.0 88 173.0 89 107.0 90 41.0 91 28.5 92 16.0 93 9.5 94 3.0 95 2.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 663039.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.39551894859395 #Duplication Level Percentage of deduplicated Percentage of total 1 78.55163393969454 18.37756240279139 2 9.060579426971433 4.239539153379013 3 3.3430654807836233 2.3463825540619077 4 1.6848607857769549 1.5767276975755058 5 1.0211119158718764 1.1944721588207778 6 0.7071490130228558 0.9926470880193441 7 0.4949164559528191 0.8105179126250599 8 0.40568877217748645 0.7593039485368157 9 0.3071858221917137 0.6468094551443085 >10 2.64780561956712 13.889902085760466 >50 0.8847486316724446 15.074310646483099 >100 0.8795442279567242 34.16471364708259 >500 0.007806605573580392 1.1089267022432265 >1k 0.0032527523223251633 2.049368383983673 >5k 0.0 0.0 >10k+ 6.505504644650328E-4 2.768816163492832 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 18192 2.7437300068321773 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4621 0.6969424121356361 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3483 0.5253084660178361 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1930 0.29108393322263093 No Hit CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT 1893 0.2855035676634406 No Hit GCCCCTGGGCTATATCTTTTATTTTGTTTTGGTTTAATATAACAGATAACC 1538 0.23196222243337117 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 870 0.13121400098636732 No Hit CTACTTGGGGACTCCTAGGACTTTGATCTTTTAAAGGTTCCCTCCCCCATC 863 0.1301582561508448 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.5082069078892795E-4 0.0 0.0 0.3640811475644721 0.0 2 1.5082069078892795E-4 0.0 0.0 0.4768950242745902 0.0 3 1.5082069078892795E-4 0.0 0.0 0.615348418418826 0.0 4 1.5082069078892795E-4 0.0 0.0 1.2177262574298042 0.0 5 1.5082069078892795E-4 0.0 0.0 1.325110589271521 0.0 6 1.5082069078892795E-4 0.0 0.0 1.9878167045980704 0.0 7 1.5082069078892795E-4 0.0 0.0 2.476777384135775 0.0 8 1.5082069078892795E-4 0.0 0.0 2.924564015088102 0.0 9 1.5082069078892795E-4 0.0 0.0 3.515931943671488 0.0 10 1.5082069078892795E-4 0.0 0.0 4.482089288865361 0.0 11 1.5082069078892795E-4 0.0 0.0 5.347950874684596 0.0 12 1.5082069078892795E-4 0.0 0.0 5.788196471097477 0.0 13 1.5082069078892795E-4 0.0 0.0 5.964958320702101 0.0 14 1.5082069078892795E-4 0.0 0.0 6.151071053135637 0.0 15 1.5082069078892795E-4 0.0 0.0 6.32089515096397 0.0 16 1.5082069078892795E-4 0.0 0.0 6.66009088454827 0.0 17 1.5082069078892795E-4 0.0 0.0 7.0777133773428105 0.0 18 1.5082069078892795E-4 0.0 0.0 7.633336802209222 0.0 19 1.5082069078892795E-4 0.0 0.0 7.849161210728178 0.0 20 1.5082069078892795E-4 0.0 0.0 8.082782460760226 0.0 21 1.5082069078892795E-4 0.0 0.0 8.326659517765924 0.0 22 1.5082069078892795E-4 0.0 0.0 8.596025271514948 0.0 23 1.5082069078892795E-4 0.0 0.0 8.873535342566576 0.0 24 1.5082069078892795E-4 0.0 0.0 9.07970722687504 0.0 25 1.5082069078892795E-4 0.0 0.0 9.270947862795401 0.0 26 1.5082069078892795E-4 0.0 0.0 9.429611229505353 0.0 27 1.5082069078892795E-4 0.0 0.0 9.626130589603326 0.0 28 1.5082069078892795E-4 0.0 0.0 9.833207398056524 0.0 29 1.5082069078892795E-4 0.0 0.0 10.032893992661066 0.0 30 1.5082069078892795E-4 0.0 0.0 10.274810380686505 0.0 31 1.5082069078892795E-4 0.0 0.0 10.465749375225288 0.0 32 1.5082069078892795E-4 0.0 0.0 10.662117914632473 0.0 33 1.5082069078892795E-4 0.0 0.0 10.862558612690957 0.0 34 1.5082069078892795E-4 0.0 0.0 11.06480915903891 0.0 35 1.5082069078892795E-4 0.0 0.0 11.286817215880212 0.0 36 1.5082069078892795E-4 0.0 0.0 11.483638217359763 0.0 37 1.5082069078892795E-4 0.0 0.0 11.683475632655092 0.0 38 1.5082069078892795E-4 0.0 0.0 11.886781923838567 0.0 39 1.5082069078892795E-4 0.0 0.0 12.136239346403455 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATAAGG 105 0.0 45.000004 2 TCACGGA 20 7.031125E-4 45.0 23 CCTTCGT 20 7.031125E-4 45.0 20 AGCGTTG 35 1.210883E-7 45.0 1 TAGAGTA 35 1.210883E-7 45.0 19 AGCGTAA 35 1.210883E-7 45.0 10 CGTGGAT 25 3.889014E-5 45.0 38 CGGAAAT 25 3.889014E-5 45.0 14 ACTATCG 35 1.210883E-7 45.0 1 AGTCCGT 40 6.8066583E-9 45.0 15 ACAGTCG 25 3.889014E-5 45.0 17 TACCCGT 25 3.889014E-5 45.0 37 TCGCAAT 20 7.031125E-4 45.0 10 CGAACGA 25 3.889014E-5 45.0 13 GATCGTA 20 7.031125E-4 45.0 20 ATTAGGC 20 7.031125E-4 45.0 41 GATCGCC 25 3.889014E-5 45.0 29 CAACGTA 25 3.889014E-5 45.0 17 ACTGATC 45 3.8380676E-10 45.0 11 CGAAACG 25 3.889014E-5 45.0 1 >>END_MODULE