SRR3553255_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553255_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	658742
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	18094	2.746750624675518	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4597	0.6978452869256856	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3479	0.5281278558221579	No Hit
CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT	1945	0.29525975268010846	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1789	0.2715782506656627	No Hit
GCCCCTGGGCTATATCTTTTATTTTGTTTTGGTTTAATATAACAGATAACC	1358	0.20615051112575183	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	895	0.13586502758287766	No Hit
CTACTTGGGGACTCCTAGGACTTTGATCTTTTAAAGGTTCCCTCCCCCATC	820	0.12447969007593261	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTGAAC	20	7.031092E-4	45.0	38
GTCATAT	25	3.8889855E-5	45.0	35
GACAGTA	20	7.031092E-4	45.0	13
TCGTTTA	25	3.8889855E-5	45.0	45
ACAGTCG	25	3.8889855E-5	45.0	17
CAAACGT	25	3.8889855E-5	45.0	39
GTACATA	20	7.031092E-4	45.0	10
GTCGAGT	20	7.031092E-4	45.0	24
CTCCGAT	25	3.8889855E-5	45.0	18
CGAGTAC	20	7.031092E-4	45.0	36
TTAGCGA	25	3.8889855E-5	45.0	12
TGGACGG	50	2.1827873E-11	45.0	2
GTTTAGC	35	1.2108649E-7	45.0	43
GTTTACG	20	7.031092E-4	45.0	1
CGCATTA	25	3.8889855E-5	45.0	22
TTTCGAA	20	7.031092E-4	45.0	29
TGGGTAT	70	0.0	45.0	6
TAGCGAG	20	7.031092E-4	45.0	1
ATTACAC	35	1.2108649E-7	45.0	19
TTGTCGA	20	7.031092E-4	45.0	22