SRR3553253_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553253_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	806162
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14960	1.8557064212900136	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3365	0.41740990024337543	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2939	0.364566923273486	No Hit
CTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCTGCT	2157	0.26756408761514433	TruSeq Adapter, Index 21 (95% over 23bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1777	0.22042715980162797	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGT	1266	0.15704039634713618	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCC	1150	0.1426512289093259	No Hit
AATCTGTCTCTTATACACATCTGACGCTATAGGACTCGTATGCCGTCTTCT	1115	0.1383096697686073	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	839	0.10407337483036908	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTAA	35	1.2113196E-7	45.000004	25
AACCGCG	70	0.0	45.000004	1
AGTTTCG	35	1.2113196E-7	45.000004	14
TATCTCG	35	1.2113196E-7	45.000004	1
CATCCGC	35	1.2113196E-7	45.000004	38
TAATGCG	35	1.2113196E-7	45.000004	1
ACACGTT	40	6.8102963E-9	45.0	35
TCGCACT	25	3.8897662E-5	45.0	12
CGAACGT	20	7.0320326E-4	45.0	38
CGTATTG	20	7.0320326E-4	45.0	13
ATCTACG	20	7.0320326E-4	45.0	40
CGAAATT	20	7.0320326E-4	45.0	13
ACGTTCA	25	3.8897662E-5	45.0	40
ACGTTAG	20	7.0320326E-4	45.0	1
GCGAAAT	20	7.0320326E-4	45.0	12
CGTTGAC	55	1.8189894E-12	45.0	18
ATTCGTT	25	3.8897662E-5	45.0	10
TTATCGT	25	3.8897662E-5	45.0	27
TTATCCG	20	7.0320326E-4	45.0	1
CCGTCAA	20	7.0320326E-4	45.0	13