SRR3553251_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553251_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	538066
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	15747	2.926592648485502	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3370	0.626317217590407	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3311	0.6153520200124148	No Hit
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	2115	0.39307445555006265	Illumina Single End Adapter 1 (95% over 21bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1570	0.2917857660584389	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	654	0.12154642738994846	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAA	25	3.8880295E-5	45.000004	11
CCTTACG	25	3.8880295E-5	45.000004	1
GGTCGAG	30	2.1633405E-6	45.000004	9
GAATGCG	25	3.8880295E-5	45.000004	1
CATGCGT	25	3.8880295E-5	45.000004	45
CGCGGAC	30	2.1633405E-6	45.000004	35
TAGAATC	30	2.1633405E-6	45.000004	19
TAGGTCG	25	3.8880295E-5	45.000004	40
CATTGCG	25	3.8880295E-5	45.000004	1
ATTACGG	50	2.1827873E-11	45.000004	2
TAACGGC	25	3.8880295E-5	45.000004	25
TATGCGT	25	3.8880295E-5	45.000004	45
TCGGCCC	30	2.1633405E-6	45.000004	42
ATCGTAC	25	3.8880295E-5	45.000004	35
CTGAACG	30	2.1633405E-6	45.000004	1
ATCCGAG	25	3.8880295E-5	45.000004	1
CCGTACA	25	3.8880295E-5	45.000004	18
AGGTTAC	25	3.8880295E-5	45.000004	32
GCTTACG	30	2.1633405E-6	45.000004	1
TCATGCG	25	3.8880295E-5	45.000004	1