SRR3553246_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553246_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	423603
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGCT	2866	0.6765768892099442	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1323	0.3123207342724202	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCC	1211	0.28588088375200366	No Hit
AATCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCT	1188	0.28045127159156097	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGT	1167	0.2754937996189829	No Hit
CCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGC	648	0.15297342086812415	No Hit
AAACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCT	542	0.12794999091130138	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTT	468	0.1104808039603119	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGA	20	7.028236E-4	45.000004	43
GGTCAAT	20	7.028236E-4	45.000004	9
TCTAGCG	20	7.028236E-4	45.000004	1
ATCGTTA	20	7.028236E-4	45.000004	12
GTTACGA	20	7.028236E-4	45.000004	15
ACGATCT	20	7.028236E-4	45.000004	32
TACGCCC	20	7.028236E-4	45.000004	28
ACGGCAT	20	7.028236E-4	45.000004	5
CCATACT	20	7.028236E-4	45.000004	18
TACTCGT	20	7.028236E-4	45.000004	21
ACGTACT	20	7.028236E-4	45.000004	14
GCGGAAT	20	7.028236E-4	45.000004	5
TCGAGGT	20	7.028236E-4	45.000004	16
TCATACG	20	7.028236E-4	45.000004	1
ATAGTCG	20	7.028236E-4	45.000004	27
GTCCAAT	20	7.028236E-4	45.000004	44
CGATCTT	20	7.028236E-4	45.000004	33
TAATGCG	20	7.028236E-4	45.000004	1
AATCGCG	20	7.028236E-4	45.000004	1
GTACGAC	20	7.028236E-4	45.000004	1