##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553246_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 423603 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.730079815298758 31.0 31.0 34.0 30.0 34.0 2 31.91997932025977 33.0 31.0 34.0 30.0 34.0 3 32.09374579500145 34.0 31.0 34.0 30.0 34.0 4 35.770046482201494 37.0 35.0 37.0 35.0 37.0 5 35.534939554252446 37.0 35.0 37.0 33.0 37.0 6 34.92965583341006 37.0 35.0 37.0 32.0 37.0 7 35.327020819021584 37.0 35.0 37.0 33.0 37.0 8 35.709633784463286 37.0 35.0 37.0 35.0 37.0 9 37.36773346742115 39.0 37.0 39.0 34.0 39.0 10 36.92631544158091 39.0 37.0 39.0 33.0 39.0 11 36.92242972783479 39.0 37.0 39.0 33.0 39.0 12 36.82255319249391 39.0 37.0 39.0 33.0 39.0 13 36.772631449730056 39.0 37.0 39.0 33.0 39.0 14 37.939761994131295 40.0 37.0 41.0 33.0 41.0 15 37.981114392485416 40.0 37.0 41.0 33.0 41.0 16 37.877219944145814 40.0 37.0 41.0 33.0 41.0 17 37.86105858551521 40.0 37.0 41.0 33.0 41.0 18 37.816106118228625 40.0 37.0 41.0 33.0 41.0 19 37.82428358628244 40.0 36.0 41.0 33.0 41.0 20 37.74271428672601 40.0 36.0 41.0 33.0 41.0 21 37.71858792312614 39.0 36.0 41.0 33.0 41.0 22 37.70643975609238 39.0 36.0 41.0 33.0 41.0 23 37.59046087964438 39.0 36.0 41.0 33.0 41.0 24 37.43825468658154 39.0 36.0 41.0 32.0 41.0 25 37.45694907732004 39.0 36.0 41.0 32.0 41.0 26 37.43631182970848 39.0 36.0 41.0 32.0 41.0 27 37.35509663529295 39.0 36.0 41.0 32.0 41.0 28 37.297242937372964 39.0 36.0 41.0 32.0 41.0 29 37.03559228806217 39.0 35.0 41.0 31.0 41.0 30 37.029577222068774 39.0 35.0 41.0 31.0 41.0 31 37.02397055733788 39.0 35.0 41.0 31.0 41.0 32 36.904103606442824 39.0 35.0 41.0 31.0 41.0 33 36.71931737971639 39.0 35.0 41.0 31.0 41.0 34 36.681307733892346 39.0 35.0 41.0 30.0 41.0 35 36.57265883386095 39.0 35.0 40.0 30.0 41.0 36 36.558659877290765 39.0 35.0 40.0 30.0 41.0 37 36.448594556695774 39.0 35.0 40.0 30.0 41.0 38 36.25287592391933 39.0 35.0 40.0 30.0 41.0 39 36.19500334039183 38.0 35.0 40.0 30.0 41.0 40 36.13703632882675 38.0 35.0 40.0 30.0 41.0 41 36.12499911473715 38.0 35.0 40.0 30.0 41.0 42 36.04545529658666 38.0 35.0 40.0 29.0 41.0 43 35.96589731423054 38.0 35.0 40.0 29.0 41.0 44 35.83642939261526 38.0 35.0 40.0 29.0 41.0 45 35.654860801269116 38.0 34.0 40.0 28.0 41.0 46 35.43856865980647 38.0 34.0 40.0 28.0 41.0 47 35.35441911412337 38.0 34.0 40.0 28.0 41.0 48 35.23454744182643 37.0 34.0 40.0 27.0 41.0 49 35.08257731885752 37.0 34.0 40.0 27.0 41.0 50 34.995970283496575 37.0 34.0 40.0 27.0 41.0 51 33.69583076607106 36.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 0.0 10 3.0 11 5.0 12 1.0 13 6.0 14 16.0 15 26.0 16 47.0 17 93.0 18 199.0 19 353.0 20 633.0 21 990.0 22 1401.0 23 1729.0 24 2236.0 25 2656.0 26 3120.0 27 3912.0 28 4752.0 29 6377.0 30 7920.0 31 10480.0 32 14011.0 33 18846.0 34 28876.0 35 34959.0 36 40864.0 37 59453.0 38 84748.0 39 94857.0 40 32.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.025575833976625 30.47995410797374 19.707603581655462 27.786866476394174 2 23.524384860352736 30.958704258468423 19.869311595999083 25.647599285179755 3 20.288099942634968 31.916204559457796 21.237101720242773 26.558593777664463 4 21.159906799526915 31.763703278777534 20.021104666397544 27.055285255298 5 18.75694931339013 34.727563308097444 18.05086366243865 28.464623716073778 6 21.74677705304259 36.25729751677868 19.280080641544085 22.71584478863464 7 82.55890539018846 6.649386335790823 5.88640779220166 4.9053004818190615 8 84.40284889389358 5.155062641199424 4.702516271131224 5.739572193775776 9 77.35780908067224 8.471847460948105 8.751590522257867 5.418752936121794 10 35.28610515034124 34.197113807031585 13.723462770565837 16.79331827206134 11 25.526023186804625 28.209195874439036 27.058590236613057 19.20619070214328 12 26.221013543341286 23.5175388276287 30.704928907491215 19.556518721538797 13 25.3657315930246 24.712525643113953 28.129876322877788 21.791866440983657 14 19.81430726411286 26.85438960536162 30.127029317544967 23.20427381298055 15 18.16512158790188 28.842335866365442 29.640960994138382 23.3515815515943 16 21.677136375332566 27.624686321862686 27.501693802923967 23.196483499880785 17 21.338375790539725 27.520107270250683 27.71344867718123 23.42806826202836 18 22.621180680967793 26.692681591018 26.441975151261914 24.24416257675229 19 22.389123778632353 30.51725318281504 26.34258964171642 20.75103339683619 20 24.33410528254049 28.297486089569716 25.695993654435874 21.672414973453918 21 23.798462239408124 29.07368455841909 25.507373649383975 21.62047955278881 22 22.547526811660916 26.93866662889545 25.943395112876917 24.570411446566716 23 22.46513834887855 28.18983812673659 24.603461259717236 24.741562264667625 24 20.4989105365165 28.426852501044607 26.55103953465863 24.523197427780257 25 23.30814465431076 28.544887548010756 24.251008609476326 23.895959188202163 26 23.838122015188752 27.68299563506396 24.12471110922255 24.354171240524735 27 20.633234419963976 27.37657665313985 25.687731201148246 26.302457725747928 28 24.67286586733333 26.833379367001648 26.61383417964462 21.8799205860204 29 24.805301190029343 28.91410117492086 23.148089130624665 23.132508504425132 30 24.227165529989165 27.998621350651437 25.44623149505551 22.327981624303888 31 27.14640831155587 28.26065915491628 21.396212963553136 23.196719569974718 32 24.58315923163906 29.304561110284865 22.214667979216387 23.897611678859686 33 24.984478391323954 26.570161212267145 24.474566988430205 23.970793407978697 34 23.444121028415758 27.146172241461937 24.586700283048042 24.823006447074263 35 24.84614131627963 27.926619972002086 25.45945142031572 21.767787291402563 36 24.69552859635083 28.98185329187942 24.792789475050935 21.529828636718815 37 22.905173003968336 30.79534375346728 22.572078101429877 23.727405141134504 38 24.44128110518575 28.58785230510643 25.732348448901448 21.238518140806367 39 22.632748115570475 27.53639610673201 25.556240158827958 24.274615618869554 40 23.63935099609776 28.035920425492737 24.94505468563726 23.379673892772242 41 21.38842265045337 25.525078906428895 27.311657377308467 25.774841065809262 42 24.758323241336818 27.310240956744874 24.245815067409815 23.68562073450849 43 22.657535475433367 25.39382393420254 26.538291749586286 25.410348840777804 44 23.64926594004292 24.419798726637914 25.698354355375198 26.23258097794397 45 25.63367114963775 24.762808573121532 26.875635913815533 22.72788436342519 46 22.258577016687795 26.088578220645275 28.353906842019533 23.298937920647397 47 22.388415568350556 25.986359869972592 26.334091118334857 25.291133443341995 48 22.278879044765972 24.743686895513015 29.29983970840622 23.67759435131479 49 22.890536658144537 25.716767822701918 27.046786731916438 24.345908787237107 50 22.139833759439853 24.021784548268073 26.275073594851783 27.56330809744029 51 22.205933385740895 23.371411439484614 29.26372098403458 25.158934190739913 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1606.0 1 1375.0 2 1144.0 3 791.0 4 438.0 5 430.5 6 423.0 7 459.5 8 496.0 9 584.0 10 672.0 11 810.0 12 948.0 13 921.0 14 894.0 15 973.5 16 1053.0 17 1092.5 18 1132.0 19 1183.0 20 1234.0 21 1268.5 22 1303.0 23 1526.5 24 1750.0 25 2181.5 26 2941.0 27 3269.0 28 4325.5 29 5382.0 30 5783.5 31 6185.0 32 7099.0 33 8013.0 34 9541.0 35 11069.0 36 12113.5 37 13158.0 38 14033.0 39 14908.0 40 15406.0 41 15904.0 42 17772.5 43 19641.0 44 23922.5 45 28204.0 46 31097.0 47 33990.0 48 37614.0 49 41238.0 50 40090.5 51 38943.0 52 34763.5 53 30584.0 54 27098.5 55 23613.0 56 22362.0 57 21111.0 58 20454.5 59 19798.0 60 19069.0 61 18340.0 62 15427.0 63 12514.0 64 11459.0 65 10404.0 66 9243.0 67 8082.0 68 7822.5 69 7563.0 70 6191.0 71 4819.0 72 4212.0 73 3605.0 74 3365.0 75 2534.0 76 1943.0 77 1526.0 78 1109.0 79 879.0 80 649.0 81 557.5 82 466.0 83 300.0 84 134.0 85 113.0 86 92.0 87 62.0 88 32.0 89 18.0 90 4.0 91 4.0 92 4.0 93 2.0 94 0.0 95 1.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 423603.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.709265693753913 #Duplication Level Percentage of deduplicated Percentage of total 1 76.5850826658123 24.28456734428349 2 9.904683157805154 6.281404597265864 3 3.4014164583657527 3.235692546402813 4 1.7511575611685684 2.22111681514881 5 1.02281052329369 1.6216285318743546 6 0.639664499459202 1.2169974940928368 7 0.4785100127351264 1.0621240791657782 8 0.42208860655451647 1.0707295817234819 9 0.3379509068545831 0.9644557587207352 >10 4.526920443472672 34.41395158279721 >50 0.8456052303737723 17.493560159576255 >100 0.07885306322313153 4.003692071587427 >500 0.001501963109012029 0.2833755763509807 >1k 0.0037549077725300725 1.8467038610099622 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGCT 2866 0.6765768892099442 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1323 0.3123207342724202 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCC 1211 0.28588088375200366 No Hit AATCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCT 1188 0.28045127159156097 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGT 1167 0.2754937996189829 No Hit CCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGC 648 0.15297342086812415 No Hit AAACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCT 542 0.12794999091130138 No Hit AAAAACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTT 468 0.1104808039603119 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7521193192682771 0.0 2 0.0 0.0 0.0 1.0840338713370774 0.0 3 0.0 0.0 0.0 1.4770905777343408 0.0 4 0.0 0.0 0.0 3.2190518008607114 0.0 5 0.0 0.0 0.0 3.47967318456196 0.0 6 0.0 0.0 0.0 4.823384159224557 0.0 7 0.0 0.0 0.0 5.866341834217415 0.0 8 0.0 0.0 0.0 6.8108582800405095 0.0 9 0.0 0.0 0.0 8.221613161379876 0.0 10 0.0 0.0 0.0 10.092232585699346 0.0 11 0.0 0.0 0.0 11.799255434923738 0.0 12 0.0 0.0 0.0 12.610864417862953 0.0 13 0.0 0.0 0.0 12.970871311109695 0.0 14 0.0 0.0 0.0 13.370774050230995 0.0 15 0.0 0.0 0.0 13.739751607047165 0.0 16 0.0 0.0 0.0 14.361560234464818 0.0 17 0.0 0.0 0.0 15.136578352844527 0.0 18 0.0 0.0 0.0 16.230055027938896 0.0 19 0.0 0.0 0.0 16.676463575564856 0.0 20 0.0 0.0 0.0 17.25483530569897 0.0 21 0.0 0.0 0.0 17.79189476939493 0.0 22 0.0 0.0 0.0 18.33650847609672 0.0 23 0.0 0.0 0.0 18.883010743549974 0.0 24 0.0 0.0 0.0 19.28669060417419 0.0 25 0.0 0.0 0.0 19.64008753479083 0.0 26 0.0 0.0 0.0 19.981917030804787 0.0 27 0.0 0.0 0.0 20.414161372794812 0.0 28 0.0 0.0 0.0 20.762128691251007 0.0 29 0.0 0.0 0.0 21.158962519151185 0.0 30 0.0 0.0 0.0 21.708297627731625 0.0 31 0.0 0.0 0.0 22.05083533402738 0.0 32 0.0 0.0 0.0 22.39738623191998 0.0 33 0.0 0.0 0.0 22.759517756012116 0.0 34 0.0 0.0 0.0 23.11149826606516 0.0 35 0.0 0.0 0.0 23.47646263128448 0.0 36 0.0 0.0 0.0 23.832456332934374 0.0 37 0.0 0.0 0.0 24.16814800650609 0.0 38 0.0 0.0 0.0 24.515407114680492 0.0 39 0.0 0.0 0.0 24.875886148115097 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTACCGA 20 7.028236E-4 45.000004 43 GGTCAAT 20 7.028236E-4 45.000004 9 TCTAGCG 20 7.028236E-4 45.000004 1 ATCGTTA 20 7.028236E-4 45.000004 12 GTTACGA 20 7.028236E-4 45.000004 15 ACGATCT 20 7.028236E-4 45.000004 32 TACGCCC 20 7.028236E-4 45.000004 28 ACGGCAT 20 7.028236E-4 45.000004 5 CCATACT 20 7.028236E-4 45.000004 18 TACTCGT 20 7.028236E-4 45.000004 21 ACGTACT 20 7.028236E-4 45.000004 14 GCGGAAT 20 7.028236E-4 45.000004 5 TCGAGGT 20 7.028236E-4 45.000004 16 TCATACG 20 7.028236E-4 45.000004 1 ATAGTCG 20 7.028236E-4 45.000004 27 GTCCAAT 20 7.028236E-4 45.000004 44 CGATCTT 20 7.028236E-4 45.000004 33 TAATGCG 20 7.028236E-4 45.000004 1 AATCGCG 20 7.028236E-4 45.000004 1 GTACGAC 20 7.028236E-4 45.000004 1 >>END_MODULE