SRR3553245_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553245_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	430626
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGCT	3090	0.7175600172771732	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCC	1429	0.33184248048190307	No Hit
AATCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCT	1380	0.3204636970364075	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1330	0.3088526935205956	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGT	1328	0.3083882533799631	No Hit
CCTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCTGC	681	0.1581418678853576	No Hit
AAACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTTCT	602	0.13979648233037487	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGGAGATCATCGTATGCCGTCTT	451	0.10473125171262301	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCCGT	25	3.8867278E-5	45.000004	36
ATCTACG	30	2.1623273E-6	45.000004	1
TTTACCG	30	2.1623273E-6	45.000004	1
GAGTCGA	25	3.8867278E-5	45.000004	20
GGCCGAT	30	2.1623273E-6	45.000004	8
TTCACGG	30	2.1623273E-6	45.000004	2
ATCGTTA	30	2.1623273E-6	45.000004	12
ATCGTAG	25	3.8867278E-5	45.000004	1
GTTACGA	30	2.1623273E-6	45.000004	15
CTAAACG	25	3.8867278E-5	45.000004	1
TACGAGG	30	2.1623273E-6	45.000004	2
TGCGACC	25	3.8867278E-5	45.000004	13
TCTCGGT	25	3.8867278E-5	45.000004	11
GTATCTA	25	3.8867278E-5	45.000004	9
ATGACCG	25	3.8867278E-5	45.000004	1
CTACCCG	25	3.8867278E-5	45.000004	35
AACGTAG	20	7.028367E-4	45.0	1
AATCCTC	20	7.028367E-4	45.0	20
CGTATCG	20	7.028367E-4	45.0	24
GATCGCC	20	7.028367E-4	45.0	9