SRR3553240_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553240_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	545400
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT	3062	0.5614228089475615	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1257	0.2304730473047305	No Hit
CTCCCTGGGAATGATACCTGTCTCTTATACACATCTGACGCTGTAGGGTTC	1034	0.1895856252291896	No Hit
CCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	815	0.14943160982764941	No Hit
AAACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCT	786	0.14411441144114412	No Hit
CTCCCTGGGAACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGC	727	0.1332966629996333	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	657	0.12046204620462046	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTT	547	0.10029336266960029	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	30	2.163395E-6	45.000004	1
GCGACGA	35	1.2103555E-7	45.000004	33
CTCAACG	55	1.8189894E-12	45.000004	1
ATGTACC	30	2.163395E-6	45.000004	21
GCGATTA	30	2.163395E-6	45.000004	8
ATAACGG	70	0.0	45.000004	2
CGCACAT	35	1.2103555E-7	45.000004	28
GAATTCG	30	2.163395E-6	45.000004	12
TTACCGG	30	2.163395E-6	45.000004	2
CAATACG	35	1.2103555E-7	45.000004	1
ACCCACG	30	2.163395E-6	45.000004	1
TCAACTC	30	2.163395E-6	45.000004	39
CACGCTA	20	7.0300244E-4	45.0	27
AATATCG	20	7.0300244E-4	45.0	1
ATCGTGT	20	7.0300244E-4	45.0	17
CGTTATG	20	7.0300244E-4	45.0	1
GTAATAG	20	7.0300244E-4	45.0	1
TATCTCG	20	7.0300244E-4	45.0	1
TGCGACG	20	7.0300244E-4	45.0	1
CAAGGCG	90	0.0	45.0	1