SRR3553239_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553239_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	556347
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT	3194	0.5741021340997614	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1284	0.23079121483534554	No Hit
CTCCCTGGGAATGATACCTGTCTCTTATACACATCTGACGCTGTAGGGTTC	1164	0.20922194242082728	No Hit
AAACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCT	910	0.1635669824767636	No Hit
CCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	907	0.16302775066640063	No Hit
CTCCCTGGGAACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGC	828	0.14882797966017614	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	679	0.12204613307881591	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTT	623	0.11198047261870739	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACACG	45	3.8380676E-10	45.000004	1
TAAACCG	45	3.8380676E-10	45.000004	1
CGTTCAT	45	3.8380676E-10	45.000004	17
AGGGCGC	45	3.8380676E-10	45.000004	6
ACGCGAG	20	7.0301443E-4	45.0	1
TCGCATA	20	7.0301443E-4	45.0	33
CGAGTGT	35	1.2104101E-7	45.0	35
GCGAAAT	20	7.0301443E-4	45.0	35
CGCATAA	20	7.0301443E-4	45.0	34
ATTACGG	35	1.2104101E-7	45.0	2
TTGTCGC	20	7.0301443E-4	45.0	21
GGATCGG	20	7.0301443E-4	45.0	8
ATTCGGT	20	7.0301443E-4	45.0	37
TACGGGT	55	1.8189894E-12	45.0	4
TCGATAA	20	7.0301443E-4	45.0	28
TTTCACG	20	7.0301443E-4	45.0	1
ATATCGG	20	7.0301443E-4	45.0	2
ACGATAG	40	6.8048394E-9	45.0	1
CTTGCGT	55	1.8189894E-12	45.0	25
CGCTAGC	20	7.0301443E-4	45.0	39