SRR3553238_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553238_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	399066
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGT	4464	1.1186119589240877	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCC	4246	1.063984403582365	No Hit
AATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCT	3810	0.9547292928989191	No Hit
CTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCT	3621	0.9073687059283427	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1730	0.43351225110633324	No Hit
AATGACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTT	1077	0.26988017019741095	No Hit
AAACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCT	931	0.23329474322543137	No Hit
CCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	814	0.20397628462459844	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTCTCCTTC	806	0.20197160369462694	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTAT	789	0.19771165671843755	No Hit
AACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTG	788	0.19746107160219115	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTT	713	0.17866718788370844	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCT	712	0.17841660276746202	No Hit
ACCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTG	463	0.1160209088220996	No Hit
TACCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCT	431	0.10800218510221367	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	425	0.10649867440473507	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCATA	40	6.7957444E-9	45.0	13
CGGGTAT	45	3.8380676E-10	45.0	6
AATCACG	20	7.027746E-4	45.0	1
CGAGTCA	20	7.027746E-4	45.0	1
GCGGTCG	20	7.027746E-4	45.0	12
CGTGATA	20	7.027746E-4	45.0	2
ATTACGG	35	1.2092642E-7	45.0	2
CACGCGC	20	7.027746E-4	45.0	2
GATTTCG	35	1.2092642E-7	45.0	5
TTGTAGG	45	3.8380676E-10	45.0	2
TAAGTCG	20	7.027746E-4	45.0	1
TTCCGCG	20	7.027746E-4	45.0	1
TACGGAT	35	1.2092642E-7	45.0	4
TTATCCG	20	7.027746E-4	45.0	1
TCTAGCG	45	3.8380676E-10	45.0	1
TCGGCAA	20	7.027746E-4	45.0	24
ATCGTGC	20	7.027746E-4	45.0	11
CTGCGTT	20	7.027746E-4	45.0	39
CATTAGT	25	3.8862134E-5	45.0	26
TAGTTCG	35	1.2092642E-7	45.0	1