SRR3553236_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553236_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	996495
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCC	3663	0.3675883973326509	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGT	3532	0.35444232033276635	No Hit
AATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCT	3324	0.33356915990546865	No Hit
CTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGCT	2922	0.29322776331040296	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1540	0.15454166854826165	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	35	1.2117016E-7	45.0	1
ATTACGA	20	7.032834E-4	45.0	31
ATAGCCG	45	3.8380676E-10	45.0	1
CGACACT	20	7.032834E-4	45.0	38
TCTAGCG	45	3.8380676E-10	45.0	1
CGTTACG	50	2.1827873E-11	45.0	1
ACGATAG	20	7.032834E-4	45.0	1
TCGGACG	35	1.2117016E-7	45.0	1
TACGATT	25	3.890431E-5	45.0	11
GATATCG	20	7.032834E-4	45.0	38
TATTACG	25	3.890431E-5	45.0	1
GTCCGAC	20	7.032834E-4	45.0	21
CGCACTA	25	3.890431E-5	45.0	13
TCATACG	20	7.032834E-4	45.0	1
CAGTACG	25	3.890431E-5	45.0	1
CGATCAC	20	7.032834E-4	45.0	30
TACGTTA	20	7.032834E-4	45.0	35
AATCGTC	20	7.032834E-4	45.0	13
CTCGTTA	30	2.1652104E-6	44.999996	45
CATACCG	60	0.0	44.999996	1