##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553234_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 250762 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.70133034510811 31.0 31.0 34.0 30.0 34.0 2 31.9055159872708 33.0 31.0 34.0 30.0 34.0 3 32.07392268366021 34.0 31.0 34.0 30.0 34.0 4 35.74906086249113 37.0 35.0 37.0 35.0 37.0 5 35.49391853630135 37.0 35.0 37.0 33.0 37.0 6 34.84069755385585 37.0 35.0 37.0 32.0 37.0 7 35.18203715076447 37.0 35.0 37.0 33.0 37.0 8 35.59442020720843 37.0 35.0 37.0 33.0 37.0 9 37.22341104314051 39.0 37.0 39.0 34.0 39.0 10 36.88256593901787 39.0 37.0 39.0 33.0 39.0 11 36.93571593782152 39.0 37.0 39.0 33.0 39.0 12 36.82314305995326 39.0 37.0 39.0 33.0 39.0 13 36.76070537003214 39.0 35.0 39.0 33.0 39.0 14 37.902182148810425 40.0 37.0 41.0 33.0 41.0 15 37.95497324155973 40.0 37.0 41.0 33.0 41.0 16 37.81286239541876 40.0 37.0 41.0 33.0 41.0 17 37.811008047471304 40.0 37.0 41.0 33.0 41.0 18 37.733639865689376 39.0 36.0 41.0 33.0 41.0 19 37.71598567566058 39.0 36.0 41.0 33.0 41.0 20 37.654078369130886 39.0 36.0 41.0 33.0 41.0 21 37.63457381899969 39.0 36.0 41.0 33.0 41.0 22 37.585894194495175 39.0 36.0 41.0 33.0 41.0 23 37.475666169515314 39.0 36.0 41.0 32.0 41.0 24 37.312343975562484 39.0 36.0 41.0 32.0 41.0 25 37.313955064961995 39.0 36.0 41.0 32.0 41.0 26 37.29462996785797 39.0 36.0 41.0 32.0 41.0 27 37.216013590575926 39.0 35.0 41.0 32.0 41.0 28 37.096944513124 39.0 35.0 41.0 31.0 41.0 29 36.823318525135385 39.0 35.0 40.0 31.0 41.0 30 36.932338233065614 39.0 35.0 40.0 31.0 41.0 31 36.812926200939536 39.0 35.0 40.0 31.0 41.0 32 36.70009411314314 39.0 35.0 40.0 31.0 41.0 33 36.53707898325903 39.0 35.0 40.0 30.0 41.0 34 36.48378940987869 39.0 35.0 40.0 30.0 41.0 35 36.429299495138814 39.0 35.0 40.0 30.0 41.0 36 36.34501639004315 39.0 35.0 40.0 30.0 41.0 37 36.165439739673474 38.0 35.0 40.0 30.0 41.0 38 35.941095540791665 38.0 35.0 40.0 29.0 41.0 39 35.8366060248363 38.0 35.0 40.0 29.0 41.0 40 35.76224467822078 38.0 35.0 40.0 29.0 41.0 41 35.700903645687944 38.0 35.0 40.0 28.0 41.0 42 35.659605522367826 38.0 35.0 40.0 28.0 41.0 43 35.62865585694802 38.0 35.0 40.0 28.0 41.0 44 35.53634123192509 38.0 35.0 40.0 28.0 41.0 45 35.27701166843461 38.0 34.0 40.0 27.0 41.0 46 35.035420039718936 37.0 34.0 40.0 26.0 41.0 47 34.951886649492344 37.0 34.0 40.0 26.0 41.0 48 34.78994424992622 37.0 34.0 40.0 26.0 41.0 49 34.69834743701199 37.0 33.0 40.0 26.0 41.0 50 34.63610913934328 37.0 34.0 40.0 26.0 41.0 51 33.20912259433248 35.0 31.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 1.0 10 1.0 11 5.0 12 5.0 13 3.0 14 15.0 15 19.0 16 32.0 17 74.0 18 131.0 19 276.0 20 461.0 21 702.0 22 1001.0 23 1260.0 24 1623.0 25 1796.0 26 2026.0 27 2516.0 28 3061.0 29 3891.0 30 5029.0 31 6458.0 32 8440.0 33 11542.0 34 16928.0 35 21998.0 36 25064.0 37 35659.0 38 49899.0 39 50823.0 40 21.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.065887175887895 35.34626458554327 19.77093818042606 25.816910058142785 2 23.22919740630558 32.81198905735319 19.606240179931568 24.352573356409664 3 20.427337475375058 30.706805656359414 21.963854172482275 26.90200269578325 4 21.659182810792704 31.32851069938826 19.121717006563994 27.89058948325504 5 17.684098866654438 37.10530303634522 17.59277721504853 27.61782088195181 6 19.64532106140484 37.229723801851954 19.945605793541286 23.17934934320192 7 78.95813560268302 8.963878099552563 6.775348737049473 5.302637560714941 8 80.62984024692736 6.307973297389556 5.383989599700114 7.678196855982963 9 73.87722222665316 9.684082915274244 10.184557468834992 6.254137389237603 10 35.018862507078424 32.42078145811567 13.534347309400946 19.026008725404967 11 24.94835740662461 29.111667637042295 25.597977364991504 20.341997591341592 12 25.13100070983642 22.882254887104107 31.542259193976758 20.444485209082718 13 24.52564583150557 25.454813727757795 27.234190188306044 22.785350252430593 14 20.003429546741533 28.33324028361554 29.437873361992644 22.225456807650282 15 18.321755289876457 29.16430719167976 28.674599819749403 23.83933769869438 16 20.39304200795974 27.791690926057377 28.57091584849379 23.244351217489093 17 20.956125728778684 27.66846651406513 25.97881656710347 25.39659119005272 18 21.939927102192517 26.196951691245086 26.34210925100294 25.52101195555945 19 22.189964986720476 29.421921981799475 26.576594539842556 21.81151849163749 20 21.742528772302023 28.29495697115193 25.532975490704334 24.429538765841716 21 23.0537322241807 28.390266467806125 26.49245100932358 22.063550298689595 22 20.78624352972141 27.042773625987987 25.664574377297996 26.50640846699261 23 22.083489523931057 28.115503943978755 22.816854228312106 26.984152303778085 24 20.241902680629444 29.557109928936605 25.278152192118426 24.922835198315536 25 22.648168382769317 27.471865753184293 24.874183488726363 25.005782375320024 26 23.217632655665533 27.453122881457322 23.467271755688664 25.861972707188492 27 21.20137819924869 25.315637935572376 25.22511385297613 28.257870012202808 28 23.5685630199153 25.15173750408754 28.03056284445012 23.249136631547042 29 22.628627942032683 29.49769103771704 22.263341335609063 25.610339684641215 30 24.006428406217847 26.67030889847744 22.966797202127914 26.356465493176795 31 24.02118343289653 28.880771408746142 21.774032748183537 25.32401241017379 32 23.021829463794354 28.032157982469435 22.672893022068735 26.273119531667476 33 25.166093746261396 24.855440616999385 23.65190898142462 26.326556655314604 34 20.288560467694467 27.364991505890046 24.816758520030945 27.529689506384543 35 23.44573739242788 25.282140037166716 25.31404279755306 25.958079772852344 36 26.006332697936692 26.013510819023615 24.35376970992415 23.62638677311554 37 23.870442890071065 29.563490481013872 20.528229955096865 26.037836673818205 38 25.355915170560134 28.529841044496372 24.097750057823752 22.01649372711974 39 24.21100485719527 27.71751700815913 24.325456010081272 23.746022124564327 40 24.48616616552747 27.959977987095336 23.624791635096226 23.929064212280966 41 21.02511544811415 26.520365924661633 27.036791858415548 25.417726768808674 42 23.220025362694507 26.563434651183194 24.746173662676163 25.470366323446136 43 21.37165918281079 22.679273574146002 27.171581021047846 28.777486221995357 44 24.054282546797364 22.42125999952146 24.72424051491055 28.800216938770628 45 27.114953621362087 23.753997814660913 26.03464639777957 23.09640216619743 46 22.40451105031863 24.70350372065943 29.023935045979854 23.86805018304209 47 23.66746157711296 24.52046163294279 25.366682352190523 26.445394437753727 48 21.726577392108855 24.611783284548697 29.20936984072547 24.452269482616984 49 22.562828498735854 24.40002871248435 27.15961748590297 25.87752530287683 50 22.693231031815028 22.301624648072675 25.686507525063607 29.31863679504869 51 21.243649356760592 22.545281980523367 30.198754197206913 26.012314465509128 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1629.0 1 1277.5 2 926.0 3 633.5 4 341.0 5 332.0 6 323.0 7 332.5 8 342.0 9 366.0 10 390.0 11 438.5 12 487.0 13 521.0 14 555.0 15 578.0 16 601.0 17 626.5 18 652.0 19 667.0 20 682.0 21 759.5 22 837.0 23 908.5 24 980.0 25 1219.0 26 1508.0 27 1558.0 28 2088.0 29 2618.0 30 2780.0 31 2942.0 32 3094.5 33 3247.0 34 4035.5 35 4824.0 36 5297.5 37 5771.0 38 5966.5 39 6162.0 40 6897.0 41 7632.0 42 9202.5 43 10773.0 44 14304.5 45 17836.0 46 20215.5 47 22595.0 48 24975.0 49 27355.0 50 25553.5 51 23752.0 52 20735.5 53 17719.0 54 16042.5 55 14366.0 56 13477.0 57 12588.0 58 12592.0 59 12596.0 60 12225.5 61 11855.0 62 10377.0 63 8899.0 64 7994.0 65 7089.0 66 6352.0 67 5615.0 68 4827.0 69 4039.0 70 3463.5 71 2888.0 72 2555.0 73 2222.0 74 1876.5 75 1263.0 76 995.0 77 784.5 78 574.0 79 450.0 80 326.0 81 227.0 82 128.0 83 78.5 84 29.0 85 22.0 86 15.0 87 13.5 88 12.0 89 6.0 90 0.0 91 3.0 92 6.0 93 4.0 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 250762.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.518332123687003 #Duplication Level Percentage of deduplicated Percentage of total 1 78.5097930057189 24.744977309161676 2 9.111038007996356 5.743294438551295 3 3.223847360696391 3.048308754915019 4 1.5271521838149704 1.9253315893157656 5 0.8388582418138569 1.3219706335090644 6 0.6111139227693709 1.1556774949952544 7 0.41373551293081634 0.9128177315542227 8 0.3061895844931424 0.7720468013494868 9 0.3061895844931424 0.8685526515181726 >10 4.115845943620629 32.4307510707364 >50 0.9539956475530138 19.54482736618786 >100 0.07338428058100106 4.003796428485975 >500 0.0025304924338276228 0.4578046115440138 >1k 0.0063262310845690565 3.0698431181758004 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGCT 2255 0.8992590583900272 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCC 1520 0.6061524473405061 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1387 0.5531141081982118 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGT 1309 0.5220089168215281 No Hit AATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT 1227 0.48930858742552696 No Hit AAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT 646 0.2576147901197151 No Hit AAAAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTT 502 0.20018982142429873 No Hit CCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC 421 0.16788827653312705 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 355 0.14156849921439452 No Hit AGCAACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC 347 0.13837822317576026 No Hit AATGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTT 323 0.12880739505985755 No Hit AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 305 0.12162927397293051 No Hit AAAAAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCT 284 0.11325479937151561 No Hit AGCCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT 277 0.11046330783771065 No Hit AACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTG 271 0.10807060080873497 No Hit AATGATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCT 266 0.10607667828458857 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTAT 260 0.1036839712556129 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.0248761774112505 0.0 2 0.0 0.0 0.0 1.4136910696197988 0.0 3 0.0 0.0 0.0 1.913368054170887 0.0 4 0.0 0.0 0.0 4.184844593678468 0.0 5 0.0 0.0 0.0 4.511449103133649 0.0 6 0.0 0.0 0.0 6.110574967499063 0.0 7 0.0 0.0 0.0 7.341223949402222 0.0 8 0.0 0.0 0.0 8.409966422344693 0.0 9 0.0 0.0 0.0 10.113972611480209 0.0 10 0.0 0.0 0.0 12.130625852401879 0.0 11 0.0 0.0 0.0 14.213876105630039 0.0 12 0.0 0.0 0.0 15.04494301369426 0.0 13 0.0 0.0 0.0 15.43854331996076 0.0 14 0.0 0.0 0.0 15.93144096792975 0.0 15 0.0 0.0 0.0 16.26283089144288 0.0 16 0.0 0.0 0.0 16.95193051578788 0.0 17 0.0 0.0 0.0 17.75348737049473 0.0 18 0.0 0.0 0.0 19.18472495832702 0.0 19 0.0 0.0 0.0 19.607037748941227 0.0 20 0.0 0.0 0.0 20.203220583661 0.0 21 0.0 0.0 0.0 20.727622207511505 0.0 22 0.0 0.0 0.0 21.202973337268006 0.0 23 0.0 0.0 0.0 21.682312312072803 0.0 24 0.0 0.0 0.0 22.02566577073081 0.0 25 0.0 0.0 0.0 22.336318899992822 0.0 26 0.0 0.0 0.0 22.615866837878148 0.0 27 0.0 0.0 0.0 23.027412446861966 0.0 28 0.0 0.0 0.0 23.412638278527048 0.0 29 0.0 0.0 0.0 23.752003892136766 0.0 30 0.0 0.0 0.0 24.258460213269952 0.0 31 0.0 0.0 0.0 24.566720635502985 0.0 32 0.0 0.0 0.0 24.886944592880898 0.0 33 0.0 0.0 0.0 25.22591142198579 0.0 34 0.0 0.0 0.0 25.504263006356624 0.0 35 0.0 0.0 0.0 25.82368939472488 0.0 36 0.0 0.0 0.0 26.109219100182642 0.0 37 0.0 0.0 0.0 26.401129357717675 0.0 38 0.0 0.0 0.0 26.679480942088514 0.0 39 0.0 0.0 0.0 27.00967451208716 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCCGCAA 30 2.158693E-6 45.000004 30 GTCGAGG 30 2.158693E-6 45.000004 2 TATGGGA 95 0.0 45.000004 4 TATGCGG 30 2.158693E-6 45.000004 2 ATGACGG 30 2.158693E-6 45.000004 2 CATAAGG 60 0.0 45.000004 2 CATAAGA 30 2.158693E-6 45.000004 20 GCAATTC 30 2.158693E-6 45.000004 24 ACGTAAG 30 2.158693E-6 45.000004 1 ATAGTGG 30 2.158693E-6 45.000004 2 ATACGAG 30 2.158693E-6 45.000004 1 CAATCGG 30 2.158693E-6 45.000004 2 CGATAGG 30 2.158693E-6 45.000004 2 TTAGGCC 20 7.0227275E-4 45.0 28 TAATAGG 20 7.0227275E-4 45.0 2 TCGTTGC 20 7.0227275E-4 45.0 16 CTCACAT 25 3.882056E-5 45.0 32 CCCTCGG 20 7.0227275E-4 45.0 2 GTACAGG 25 3.882056E-5 45.0 2 GATCGCC 20 7.0227275E-4 45.0 21 >>END_MODULE