SRR3553233_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553233_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	256046
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGCT	2440	0.9529537661201503	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCC	1675	0.6541793271521523	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGT	1451	0.5666950469837451	No Hit
AATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT	1361	0.5315451129875101	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1312	0.5124079267006709	No Hit
AAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT	751	0.29330667145747247	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTT	522	0.20386961717816332	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	420	0.16403302531576355	No Hit
CCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	412	0.16090858673832045	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	340	0.1327886395413324	No Hit
AATGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTT	338	0.13200752989697165	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCT	329	0.12849253649734813	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCT	315	0.12302476898682269	No Hit
AGCAACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	307	0.11990033040937956	No Hit
AACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTG	306	0.11950977558719918	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	281	0.10974590503268944	No Hit
AGCCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT	276	0.1077931309217875	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTAT	264	0.1031064730556228	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAGGG	45	3.8198777E-10	45.000004	3
TTGATGG	25	3.882286E-5	45.0	2
CAGCGTC	25	3.882286E-5	45.0	3
GACAGTA	20	7.023006E-4	45.0	42
CGGGTCA	25	3.882286E-5	45.0	6
TAATAGT	20	7.023006E-4	45.0	21
ACTATCC	20	7.023006E-4	45.0	43
ACTGCGA	25	3.882286E-5	45.0	23
GGTAATT	20	7.023006E-4	45.0	8
GGTGTCG	20	7.023006E-4	45.0	1
ATCTACG	20	7.023006E-4	45.0	1
GTCGAAC	20	7.023006E-4	45.0	11
CCGATTC	20	7.023006E-4	45.0	39
TCCGATT	20	7.023006E-4	45.0	38
CTATCAA	25	3.882286E-5	45.0	34
TTTCGTC	20	7.023006E-4	45.0	33
GAACTTA	20	7.023006E-4	45.0	9
AGCTTCG	20	7.023006E-4	45.0	32
GACCGCG	20	7.023006E-4	45.0	34
GCAAACG	20	7.023006E-4	45.0	1