SRR3553211_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553211_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	415883
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCC	4043	0.9721484167422088	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGT	3951	0.9500268104250473	No Hit
CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT	3509	0.8437469192056419	No Hit
AATCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCT	3497	0.8408614922947079	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1405	0.33783540082186575	No Hit
AACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTG	969	0.23299822305792736	No Hit
AAACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCT	959	0.23059370063214896	No Hit
AATGACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTT	926	0.2226587766270802	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCT	657	0.15797712337364114	No Hit
CCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	582	0.13994320518030312	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTAT	581	0.13970275293772527	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTT	579	0.1392218484525696	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCTGACTTC	559	0.1344128036010128	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGT	20	7.028087E-4	45.000004	31
TATCATG	20	7.028087E-4	45.000004	31
TACCCCA	20	7.028087E-4	45.000004	41
ATCTACG	20	7.028087E-4	45.000004	1
CACGGTT	20	7.028087E-4	45.000004	32
ACGTTTG	20	7.028087E-4	45.000004	1
CTATCTA	20	7.028087E-4	45.000004	21
AGATACG	20	7.028087E-4	45.000004	1
GAATGCG	20	7.028087E-4	45.000004	10
CGACGAA	20	7.028087E-4	45.000004	1
CCCTATC	20	7.028087E-4	45.000004	44
TTACTCG	20	7.028087E-4	45.000004	1
TAACGTT	20	7.028087E-4	45.000004	23
TGTGCGC	30	2.1621472E-6	45.000004	42
CCGTCAA	20	7.028087E-4	45.000004	13
CGTTAGA	20	7.028087E-4	45.000004	44
AAACGTA	20	7.028087E-4	45.000004	31
TGCGCGT	30	2.1621472E-6	45.000004	44
CATAGCG	20	7.028087E-4	45.000004	1
AGCATCG	20	7.028087E-4	45.000004	1