##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553211_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 415883 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.745577482128386 31.0 31.0 34.0 30.0 34.0 2 31.93387082424624 33.0 31.0 34.0 30.0 34.0 3 32.06770654246507 33.0 31.0 34.0 30.0 34.0 4 35.74433915307911 37.0 35.0 37.0 33.0 37.0 5 35.518073592813366 37.0 35.0 37.0 33.0 37.0 6 35.54079152069212 37.0 35.0 37.0 33.0 37.0 7 35.58498904740035 37.0 35.0 37.0 33.0 37.0 8 35.68114109016238 37.0 35.0 37.0 35.0 37.0 9 37.397897966495385 39.0 37.0 39.0 35.0 39.0 10 36.93579684670929 39.0 37.0 39.0 33.0 39.0 11 36.92209106888235 39.0 37.0 39.0 33.0 39.0 12 36.770387344517566 39.0 35.0 39.0 33.0 39.0 13 36.749643529550376 39.0 35.0 39.0 33.0 39.0 14 37.85727476237307 40.0 37.0 41.0 33.0 41.0 15 37.88746594595114 40.0 37.0 41.0 33.0 41.0 16 37.77881038657507 40.0 36.0 41.0 33.0 41.0 17 37.76440008367738 39.0 36.0 41.0 33.0 41.0 18 37.6486079017416 39.0 36.0 41.0 33.0 41.0 19 37.684355936645645 39.0 36.0 41.0 32.0 41.0 20 37.667517066097915 39.0 36.0 41.0 33.0 41.0 21 37.62773183804099 39.0 36.0 41.0 33.0 41.0 22 37.5839959796385 39.0 36.0 41.0 32.0 41.0 23 37.48960645181457 39.0 36.0 41.0 32.0 41.0 24 37.37212148609104 39.0 36.0 41.0 32.0 41.0 25 37.399864865839675 39.0 36.0 41.0 32.0 41.0 26 37.33897514445169 39.0 36.0 41.0 32.0 41.0 27 37.311327945600084 39.0 36.0 41.0 32.0 41.0 28 37.25872420849133 39.0 36.0 41.0 32.0 41.0 29 37.14364136067115 39.0 35.0 41.0 32.0 41.0 30 37.128468824164486 39.0 35.0 41.0 31.0 41.0 31 36.94808395630502 39.0 35.0 41.0 31.0 41.0 32 36.84915228561879 39.0 35.0 41.0 31.0 41.0 33 36.7196759665579 39.0 35.0 41.0 31.0 41.0 34 36.715619537225614 39.0 35.0 41.0 31.0 41.0 35 36.61708220821721 39.0 35.0 41.0 30.0 41.0 36 36.60297487514517 39.0 35.0 40.0 30.0 41.0 37 36.53608827482729 39.0 35.0 40.0 30.0 41.0 38 36.423811504678 39.0 35.0 40.0 30.0 41.0 39 36.32864050706569 39.0 35.0 40.0 30.0 41.0 40 36.13961378560797 38.0 35.0 40.0 30.0 41.0 41 36.15060726213863 38.0 35.0 40.0 30.0 41.0 42 36.095262369464486 38.0 35.0 40.0 30.0 41.0 43 36.045943209989346 38.0 35.0 40.0 30.0 41.0 44 35.97341319553817 38.0 35.0 40.0 30.0 41.0 45 35.72708910919658 38.0 35.0 40.0 29.0 41.0 46 35.591769800641046 38.0 34.0 40.0 29.0 41.0 47 35.443396339835964 38.0 34.0 40.0 28.0 41.0 48 35.410427932856116 38.0 34.0 40.0 28.0 41.0 49 35.24457359401563 37.0 34.0 40.0 27.0 41.0 50 35.20386262482477 37.0 34.0 40.0 27.0 41.0 51 33.842640838889785 36.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 3.0 10 2.0 11 1.0 12 4.0 13 4.0 14 9.0 15 19.0 16 39.0 17 84.0 18 168.0 19 311.0 20 567.0 21 987.0 22 1390.0 23 1849.0 24 2355.0 25 2831.0 26 3033.0 27 3874.0 28 4577.0 29 5883.0 30 7715.0 31 10296.0 32 13302.0 33 18003.0 34 28587.0 35 34818.0 36 38992.0 37 55441.0 38 84348.0 39 96369.0 40 21.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.234736692771765 34.577753839421185 19.737281879759454 26.450227588047596 2 22.739809032828944 34.42530711762683 19.25661784684635 23.578266002697873 3 21.229528497197528 30.227010962217737 23.641745394738425 24.901715145846307 4 22.834547216404612 31.310007862788332 18.44028248329458 27.415162437512475 5 17.2019534340187 35.794682639107634 18.68891010212007 28.3144538247536 6 21.038368964348145 33.99609986462539 22.785494958918733 22.18003621210773 7 80.21198269705663 8.050581533748675 6.838942683398937 4.8984930857957645 8 81.83239035978869 4.419271766338129 5.198337032290332 8.550000841582849 9 76.97357189401826 7.745688090159973 9.631314576455399 5.64942543936636 10 36.46987253626621 29.622994928862205 15.379806339763826 18.52732619510776 11 26.134994698028052 28.622713599738386 24.51170160838505 20.730590093848512 12 26.85226373763775 23.403457222343786 31.675976175991806 18.068302864026663 13 27.248288581163454 25.066905836497284 26.169138916474104 21.51566666586516 14 21.427661145081668 27.218232050841223 30.401579290329252 20.952527513747857 15 18.804086726314853 28.846093733093202 28.769870372196028 23.57994916839592 16 21.467576217349592 27.535388558801394 28.132191024879592 22.864844198969422 17 20.41223132467545 26.325192421907122 28.798003284577632 24.464572968839793 18 22.746782147863705 26.119124850017915 26.21097760668265 24.923115395435737 19 22.82180324754799 29.916587117049747 26.61349466075795 20.64811497464431 20 24.17530892101865 28.669842239283643 25.297259084886853 21.85758975481085 21 23.39528184609614 26.69284390080864 26.4990393932909 23.41283485980432 22 21.449301846913677 26.903720517549406 25.96283089234232 25.684146743194603 23 23.335649689936833 27.38438455046251 23.918505925945517 25.361459833655136 24 19.279701262133823 29.665074071313324 25.946480139847022 25.108744526705827 25 22.08770255095784 26.1768333882366 25.736324879833994 25.99913918097157 26 23.772791866943347 26.71544641161096 24.28784057054508 25.223921150900612 27 19.516546721072995 25.738008045532034 26.78181123056244 27.963634002832528 28 20.83061822676089 26.265560265747816 28.56692867946033 24.336892828030958 29 21.523120685385074 27.449547108201106 24.434516438517566 26.592815767896262 30 22.611888439777534 24.848334747994027 25.954415063852093 26.585361748376346 31 23.89614386738578 26.425701459304662 24.353964937253988 25.324189736055576 32 24.65308752702082 24.753115659933204 23.96371094755015 26.630085865495822 33 22.39403870800201 26.414159751660925 26.119846206745645 25.07195533359142 34 20.547365485004196 24.777401336433563 26.548572555261934 28.126660623300303 35 20.879189579761615 24.612691550267744 29.31401379714968 25.19410507282096 36 22.31637263364937 25.462209323295255 26.906605944460342 25.314812098595034 37 21.747703079952778 26.677454957283658 24.901955598088886 26.67288636467468 38 23.070430866373474 26.36582885090278 28.347395781986762 22.216344500736987 39 22.51739070844444 24.38305965860591 27.488740823741292 25.610808809208358 40 23.138238398780427 25.813990954186632 25.98495249865948 25.062818148373463 41 20.228766263588557 22.433472875784776 31.256627464936056 26.081133395690614 42 23.12212809852771 24.18011796587021 26.96912352753058 25.728630408071503 43 20.51562578898392 22.21345907382605 29.00791809234809 28.262997044841935 44 22.240630177237346 20.84095767319174 27.9780611373872 28.94035101218371 45 25.252534967767374 23.263033112678325 28.491667127533464 22.992764792020832 46 20.852739833078054 23.04277885847702 30.84689684358341 25.25758446486151 47 21.628679219876744 25.57858820870293 26.17515022253855 26.617582348881776 48 20.579586085509625 22.90187384432641 30.758650870557346 25.759889199606622 49 21.891493521014326 22.7826095320078 29.50012383290493 25.82577311407295 50 21.563757114380728 21.82176237066675 27.065304424561713 29.549176090390805 51 21.757561621898468 20.788779536552347 31.366995044279278 26.086663797269903 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1629.0 1 1301.0 2 973.0 3 746.5 4 520.0 5 439.5 6 359.0 7 369.5 8 380.0 9 406.0 10 432.0 11 490.0 12 548.0 13 574.0 14 600.0 15 688.0 16 776.0 17 780.0 18 784.0 19 953.5 20 1123.0 21 1042.5 22 962.0 23 1204.0 24 1446.0 25 1635.5 26 2177.0 27 2529.0 28 3119.5 29 3710.0 30 4825.5 31 5941.0 32 7381.5 33 8822.0 34 8967.5 35 9113.0 36 10246.5 37 11380.0 38 11236.5 39 11093.0 40 12127.0 41 13161.0 42 15658.0 43 18155.0 44 26735.0 45 35315.0 46 38323.0 47 41331.0 48 41780.5 49 42230.0 50 38838.5 51 35447.0 52 32131.0 53 28815.0 54 26931.5 55 25048.0 56 23651.0 57 22254.0 58 21031.5 59 19809.0 60 18866.0 61 17923.0 62 16659.0 63 15395.0 64 13566.0 65 11737.0 66 9943.0 67 8149.0 68 6679.5 69 5210.0 70 4787.0 71 4364.0 72 3474.5 73 2585.0 74 2227.5 75 1370.0 76 870.0 77 737.5 78 605.0 79 465.0 80 325.0 81 236.0 82 147.0 83 121.5 84 96.0 85 72.5 86 49.0 87 38.5 88 28.0 89 20.0 90 12.0 91 7.5 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 2.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 415883.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.92918074499053 #Duplication Level Percentage of deduplicated Percentage of total 1 74.32678993950312 18.529059805968167 2 11.01275146115982 5.490777433498234 3 3.9612227709721797 2.96250115286213 4 1.9142227811932297 1.9088002279417795 5 1.138339953230181 1.4188941221659623 6 0.7412292600313902 1.1086942918078868 7 0.5037927094986087 0.8791397659169525 8 0.39405526190283546 0.7858779877992291 9 0.3312058908029841 0.7431022364069868 >10 3.8457791464055155 23.601204963479965 >50 1.49242168645724 26.342326995070938 >100 0.3252202338135429 10.704352622890838 >500 0.007980864633461177 1.4454183691334406 >1k 0.004988040395913235 4.079850025057484 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCC 4043 0.9721484167422088 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGT 3951 0.9500268104250473 No Hit CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT 3509 0.8437469192056419 No Hit AATCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCT 3497 0.8408614922947079 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1405 0.33783540082186575 No Hit AACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTG 969 0.23299822305792736 No Hit AAACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCT 959 0.23059370063214896 No Hit AATGACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTT 926 0.2226587766270802 No Hit AATGATCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCT 657 0.15797712337364114 No Hit CCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC 582 0.13994320518030312 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTAT 581 0.13970275293772527 No Hit AAAAACTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTT 579 0.1392218484525696 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCTGACTTC 559 0.1344128036010128 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.958202186672694 0.0 2 0.0 0.0 0.0 1.2751182423902876 0.0 3 0.0 0.0 0.0 1.9111144240086755 0.0 4 0.0 0.0 0.0 4.407970510936971 0.0 5 0.0 0.0 0.0 4.708776266401848 0.0 6 0.0 0.0 0.0 6.2669067983062545 0.0 7 0.0 0.0 0.0 7.398715504120149 0.0 8 0.0 0.0 0.0 8.203749612270759 0.0 9 0.0 0.0 0.0 10.18772106578052 0.0 10 0.0 0.0 0.0 11.821834506339524 0.0 11 0.0 0.0 0.0 14.209284822894901 0.0 12 0.0 0.0 0.0 15.012635765347465 0.0 13 0.0 0.0 0.0 15.46636914709185 0.0 14 0.0 0.0 0.0 15.917938458653035 0.0 15 0.0 0.0 0.0 16.2199464753308 0.0 16 2.404522425778404E-4 0.0 0.0 16.804966781522687 0.0 17 2.404522425778404E-4 0.0 0.0 17.51502225385505 0.0 18 2.404522425778404E-4 0.0 0.0 18.65717040609979 0.0 19 2.404522425778404E-4 0.0 0.0 19.039008567313402 0.0 20 2.404522425778404E-4 0.0 0.0 19.491058783359744 0.0 21 2.404522425778404E-4 0.0 0.0 19.965951962450976 0.0 22 2.404522425778404E-4 0.0 0.0 20.425937102502388 0.0 23 2.404522425778404E-4 0.0 0.0 20.90852475335611 0.0 24 2.404522425778404E-4 0.0 0.0 21.25429507818305 0.0 25 2.404522425778404E-4 0.0 0.0 21.564959375593617 0.0 26 2.404522425778404E-4 0.0 0.0 21.833544530553063 0.0 27 2.404522425778404E-4 0.0 0.0 22.15142239524097 0.0 28 2.404522425778404E-4 0.0 0.0 22.494788197642126 0.0 29 2.404522425778404E-4 0.0 0.0 22.80809746972105 0.0 30 2.404522425778404E-4 0.0 0.0 23.256781354371302 0.0 31 2.404522425778404E-4 0.0 0.0 23.54989263807369 0.0 32 2.404522425778404E-4 0.0 0.0 23.87714814022213 0.0 33 2.404522425778404E-4 0.0 0.0 24.21426218431626 0.0 34 2.404522425778404E-4 0.0 0.0 24.51073979941474 0.0 35 2.404522425778404E-4 0.0 0.0 24.855548315271363 0.0 36 2.404522425778404E-4 0.0 0.0 25.180399294994025 0.0 37 2.404522425778404E-4 0.0 0.0 25.487216356523348 0.0 38 7.213567277335212E-4 0.0 0.0 25.81134597951828 0.0 39 7.213567277335212E-4 0.0 0.0 26.17731429272175 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGGT 20 7.028087E-4 45.000004 31 TATCATG 20 7.028087E-4 45.000004 31 TACCCCA 20 7.028087E-4 45.000004 41 ATCTACG 20 7.028087E-4 45.000004 1 CACGGTT 20 7.028087E-4 45.000004 32 ACGTTTG 20 7.028087E-4 45.000004 1 CTATCTA 20 7.028087E-4 45.000004 21 AGATACG 20 7.028087E-4 45.000004 1 GAATGCG 20 7.028087E-4 45.000004 10 CGACGAA 20 7.028087E-4 45.000004 1 CCCTATC 20 7.028087E-4 45.000004 44 TTACTCG 20 7.028087E-4 45.000004 1 TAACGTT 20 7.028087E-4 45.000004 23 TGTGCGC 30 2.1621472E-6 45.000004 42 CCGTCAA 20 7.028087E-4 45.000004 13 CGTTAGA 20 7.028087E-4 45.000004 44 AAACGTA 20 7.028087E-4 45.000004 31 TGCGCGT 30 2.1621472E-6 45.000004 44 CATAGCG 20 7.028087E-4 45.000004 1 AGCATCG 20 7.028087E-4 45.000004 1 >>END_MODULE