SRR3553210_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553210_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	487893
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGCT	5177	1.0610933134929175	TruSeq Adapter, Index 16 (95% over 24bp)
AATGATACCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGT	4572	0.9370907145624142	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCC	4461	0.9143398245107022	No Hit
AATCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCT	4019	0.8237461902507311	TruSeq Adapter, Index 16 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1933	0.39619342765729365	No Hit
AAACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCT	1432	0.2935069779644307	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTT	1091	0.2236146040217835	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTT	1082	0.22176993726083383	No Hit
CCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC	929	0.19041060232469006	TruSeq Adapter, Index 13 (95% over 21bp)
AATGATCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCT	890	0.18241704636057496	No Hit
AACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG	851	0.17442349039645988	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTCCCCTATC	656	0.13445571057588449	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTAT	644	0.1319961548946183	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCT	585	0.11990333946172624	No Hit
ACCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG	557	0.11416437620543848	TruSeq Adapter, Index 16 (95% over 22bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	523	0.10719563510851765	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTCA	30	2.162924E-6	45.000004	36
GTCTCGC	35	1.21001E-7	45.000004	31
CGCGATG	30	2.162924E-6	45.000004	1
CCGCTCA	35	1.21001E-7	45.000004	45
ACCTCGC	30	2.162924E-6	45.000004	25
TCTCGCG	35	1.21001E-7	45.000004	32
CATACTC	35	1.21001E-7	45.000004	43
CTCGCGA	35	1.21001E-7	45.000004	33
CTCGATC	30	2.162924E-6	45.000004	16
TACTACG	30	2.162924E-6	45.000004	1
ACGTACT	30	2.162924E-6	45.000004	24
TCGCGAG	35	1.21001E-7	45.000004	34
ACGACAG	35	1.21001E-7	45.000004	1
TAGAGTC	20	7.02929E-4	45.0	40
TGATAGT	20	7.02929E-4	45.0	33
ACACGTC	25	3.8874943E-5	45.0	11
CGAACGC	20	7.02929E-4	45.0	39
ACACGAT	20	7.02929E-4	45.0	11
CGAACAG	25	3.8874943E-5	45.0	1
ACTGCCG	20	7.02929E-4	45.0	33