SRR3553209_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553209_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	501644
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGCT	5435	1.083437656983837	TruSeq Adapter, Index 16 (95% over 24bp)
AATGATACCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGT	5050	1.0066900032692507	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCC	4992	0.9951280190732871	No Hit
AATCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCT	4518	0.9006386999545495	TruSeq Adapter, Index 16 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1951	0.38892122700560555	No Hit
AAACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCT	1627	0.32433359115229127	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTT	1226	0.2443964245560597	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTT	1222	0.24359904633564836	No Hit
CCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTGC	1045	0.20831506008244888	TruSeq Adapter, Index 13 (95% over 21bp)
AATGATCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCT	1029	0.20512554720080378	No Hit
AACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG	932	0.18578912535583003	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTAT	695	0.13854446579646124	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCT	676	0.1347569192495076	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTCCCCTATC	664	0.13236478458827375	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	579	0.1154204974045339	No Hit
ACCTGTCTCTTATACACATCTGACGCTTCCCCTATCGTATGCCGTCTTCTG	572	0.11402508551881414	TruSeq Adapter, Index 16 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTCGT	20	7.029479E-4	45.000004	19
GTACCGG	20	7.029479E-4	45.000004	2
TCCGCGC	20	7.029479E-4	45.000004	27
AATTTCG	30	2.1630458E-6	45.000004	39
CGACGTT	30	2.1630458E-6	45.000004	24
CTTCCGA	30	2.1630458E-6	45.000004	21
CCGATCT	20	7.029479E-4	45.000004	21
CGGCCGT	30	2.1630458E-6	45.000004	41
TCCGACT	30	2.1630458E-6	45.000004	23
GCTATTC	20	7.029479E-4	45.000004	7
GATCCGA	20	7.029479E-4	45.000004	10
CACGCTA	20	7.029479E-4	45.000004	41
TAAACCG	20	7.029479E-4	45.000004	1
ATTCGTT	20	7.029479E-4	45.000004	41
TCCTCGA	20	7.029479E-4	45.000004	10
TAAGTGT	30	2.1630458E-6	45.000004	14
CGACAGT	20	7.029479E-4	45.000004	2
TGTGCTA	30	2.1630458E-6	45.000004	20
GCGTTGC	20	7.029479E-4	45.000004	39
CCGTCTA	20	7.029479E-4	45.000004	37