SRR3553197_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553197_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	354878
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT	2327	0.6557183031915192	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1237	0.34857049464886525	No Hit
AAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT	661	0.186261193987793	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	636	0.17921651947993394	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTT	454	0.12793128906272014	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCC	431	0.12145018851548983	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGT	424	0.1194776796532893	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	415	0.11694159683046004	No Hit
AATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT	415	0.11694159683046004	No Hit
ATGGGAGGGCATGCAAAAACTAACATTGAAATTTTGAAACAGCAGCAGAGT	364	0.10257046083442761	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTGA	90	0.0	45.000004	24
CGTTGAT	90	0.0	45.000004	25
CTTAACA	25	3.8853374E-5	45.0	21
TATCAGG	40	6.7921064E-9	45.0	2
GAGGATA	20	7.02669E-4	45.0	20
TAGAGTC	25	3.8853374E-5	45.0	19
AACGTAG	20	7.02669E-4	45.0	1
AGCGTGC	20	7.02669E-4	45.0	15
AGGTACC	25	3.8853374E-5	45.0	12
TCGCATC	25	3.8853374E-5	45.0	41
GGTACGT	20	7.02669E-4	45.0	31
GTCGCAC	20	7.02669E-4	45.0	34
TCGCACG	20	7.02669E-4	45.0	35
CGTATAG	20	7.02669E-4	45.0	1
CAACGGT	20	7.02669E-4	45.0	30
CGACGGT	20	7.02669E-4	45.0	28
ACGTTAA	35	1.2087548E-7	45.0	10
ACTTGCG	35	1.2087548E-7	45.0	1
TCACACG	35	1.2087548E-7	45.0	1
ACCGCGT	20	7.02669E-4	45.0	25