SRR3553196_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553196_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1133425
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGCT	2217	0.19560182632287096	Illumina Single End Adapter 2 (95% over 21bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCC	1818	0.16039879127423518	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGT	1793	0.1581930873238194	No Hit
AATCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCT	1659	0.14637051414959085	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	60	0.0	45.000004	1
TTACGCG	20	7.033244E-4	45.000004	1
TGCCGTA	20	7.033244E-4	45.000004	20
CGTATAG	50	2.1827873E-11	45.0	1
CGCAATA	25	3.8907718E-5	45.0	36
TATACGG	100	0.0	42.75	2
ATATCCG	80	0.0	42.187504	1
TAAACCG	70	0.0	41.785717	1
TAGCCCG	70	0.0	41.785717	1
AACGGGC	300	0.0	40.5	4
TATTCCG	50	1.0822987E-9	40.5	1
ATGCGAG	50	1.0822987E-9	40.5	1
AATAGCG	50	1.0822987E-9	40.5	1
TATACCG	50	1.0822987E-9	40.5	1
AATACCG	145	0.0	40.344826	1
CATACGA	285	0.0	40.263157	18
TATCTCG	45	1.9283107E-8	40.0	1
TATAGCG	45	1.9283107E-8	40.0	1
AGGGCGT	45	1.9283107E-8	40.0	6
TATAACG	45	1.9283107E-8	40.0	1