SRR3553195_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553195_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1147632
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCTGCT	2308	0.20110976340847936	Illumina Single End Adapter 2 (95% over 21bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCC	2109	0.18376971015098917	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGT	2008	0.17496897960321775	No Hit
AATCTGTCTCTTATACACATCTGACGCTAGCTGGATCGTATGCCGTCTTCT	1902	0.16573256932535865	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTCG	25	3.890801E-5	45.000004	1
CCGATAG	25	3.890801E-5	45.000004	1
ACGACCG	25	3.890801E-5	45.000004	1
TATCTCG	55	1.8189894E-12	45.0	1
CGTAGCA	20	7.0332823E-4	45.0	12
ACGTCTA	45	3.8562575E-10	45.0	43
GCCGTAT	20	7.0332823E-4	45.0	42
CGTATAG	30	2.1654996E-6	44.999996	1
TCGTCGA	30	2.1654996E-6	44.999996	40
TTACGCG	80	0.0	42.1875	1
TAATGCG	70	0.0	41.785717	1
GGCTACG	70	0.0	41.785717	1
ATATCCG	120	0.0	41.249996	1
TAAACCG	110	0.0	40.909092	1
ATCAGCG	160	0.0	40.78125	1
ATTAGCG	50	1.0822987E-9	40.500004	1
CTCGTAA	50	1.0822987E-9	40.500004	33
TATAGCG	50	1.0822987E-9	40.500004	1
TATACGG	95	0.0	40.263157	2
ATACGGG	620	0.0	39.919353	3