SRR3553190_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553190_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	801216
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT	2516	0.3140226855180126	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCC	1176	0.1467768991133477	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGT	1132	0.14128524642543333	No Hit
AATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCT	1083	0.13516954229571054	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	830	0.10359253934020289	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAGACG	45	3.8380676E-10	45.000004	1
TTTAGCG	40	6.8102963E-9	45.0	1
CGAAACG	20	7.032005E-4	45.0	1
CGACACG	40	6.8102963E-9	45.0	1
TCTAGCG	35	1.2113196E-7	45.0	1
CCGTCCG	25	3.8897444E-5	45.0	1
AAACGCG	35	1.2113196E-7	45.0	1
ACGATAG	70	0.0	45.0	1
AATTGCG	25	3.8897444E-5	45.0	1
CGTAGGT	20	7.032005E-4	45.0	19
TCGTAAG	25	3.8897444E-5	45.0	1
ACTCCCG	25	3.8897444E-5	45.0	1
ATCGGCG	20	7.032005E-4	45.0	44
GCCGTTT	20	7.032005E-4	45.0	26
ATTACCG	60	0.0	44.999996	1
CGTAGCG	30	2.1646756E-6	44.999996	1
TACGACG	65	0.0	44.999996	1
TCATACG	30	2.1646756E-6	44.999996	1
TACTACG	65	0.0	41.53846	1
ACGGGTC	115	0.0	41.086956	5