##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553190_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 801216 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.950417864845434 33.0 31.0 34.0 30.0 34.0 2 32.1608517553319 34.0 31.0 34.0 30.0 34.0 3 32.31333248462337 34.0 31.0 34.0 30.0 34.0 4 35.94152762800543 37.0 35.0 37.0 35.0 37.0 5 35.73069309649333 37.0 35.0 37.0 35.0 37.0 6 35.03960480070293 37.0 35.0 37.0 33.0 37.0 7 35.46442657161115 37.0 35.0 37.0 35.0 37.0 8 35.87925727893602 37.0 35.0 37.0 35.0 37.0 9 37.55438982746226 39.0 37.0 39.0 35.0 39.0 10 37.11476555635434 39.0 37.0 39.0 33.0 39.0 11 37.08731478153207 39.0 37.0 39.0 33.0 39.0 12 36.92677879622973 39.0 37.0 39.0 33.0 39.0 13 36.92294087986261 39.0 37.0 39.0 33.0 39.0 14 38.14238232886013 40.0 37.0 41.0 33.0 41.0 15 38.15923546209761 40.0 37.0 41.0 33.0 41.0 16 38.059596912692705 40.0 37.0 41.0 33.0 41.0 17 38.05432118180366 40.0 37.0 41.0 33.0 41.0 18 38.05075784807093 40.0 37.0 41.0 33.0 41.0 19 38.091850387411135 40.0 37.0 41.0 33.0 41.0 20 38.00464793513859 40.0 37.0 41.0 33.0 41.0 21 38.0000686456586 40.0 37.0 41.0 33.0 41.0 22 37.98334781132678 40.0 37.0 41.0 33.0 41.0 23 37.88543538820992 40.0 37.0 41.0 33.0 41.0 24 37.750245876268075 40.0 36.0 41.0 33.0 41.0 25 37.77761926871156 40.0 36.0 41.0 33.0 41.0 26 37.72878849149293 40.0 36.0 41.0 33.0 41.0 27 37.65178428788242 40.0 36.0 41.0 33.0 41.0 28 37.571729720824344 40.0 36.0 41.0 33.0 41.0 29 37.38399258127646 39.0 36.0 41.0 32.0 41.0 30 37.45710769630162 39.0 36.0 41.0 32.0 41.0 31 37.40465866882339 39.0 36.0 41.0 32.0 41.0 32 37.37025845714514 39.0 36.0 41.0 32.0 41.0 33 37.14737973280614 39.0 35.0 41.0 32.0 41.0 34 37.1092302200655 39.0 35.0 41.0 31.0 41.0 35 37.06330253015417 39.0 35.0 41.0 31.0 41.0 36 37.00909742191868 39.0 35.0 41.0 31.0 41.0 37 36.985103892084034 39.0 35.0 41.0 31.0 41.0 38 36.8091401070373 39.0 35.0 41.0 31.0 41.0 39 36.809420930186114 39.0 35.0 41.0 31.0 41.0 40 36.75126557632399 39.0 35.0 41.0 31.0 41.0 41 36.728208123652045 39.0 35.0 41.0 31.0 41.0 42 36.65484213994728 39.0 35.0 41.0 31.0 41.0 43 36.58456021846793 39.0 35.0 40.0 31.0 41.0 44 36.48807312884416 39.0 35.0 40.0 31.0 41.0 45 36.261534966850384 38.0 35.0 40.0 30.0 41.0 46 36.12073148813803 38.0 35.0 40.0 30.0 41.0 47 36.00424230170142 38.0 35.0 40.0 30.0 41.0 48 35.93437100607077 38.0 35.0 40.0 30.0 41.0 49 35.83956386292835 38.0 35.0 40.0 29.0 41.0 50 35.74381689831456 38.0 34.0 40.0 29.0 41.0 51 34.59956366323189 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 2.0 10 6.0 11 6.0 12 9.0 13 11.0 14 22.0 15 39.0 16 79.0 17 104.0 18 209.0 19 430.0 20 770.0 21 1217.0 22 1762.0 23 2243.0 24 2855.0 25 3617.0 26 4676.0 27 5824.0 28 7433.0 29 9697.0 30 12777.0 31 17149.0 32 22828.0 33 31985.0 34 51738.0 35 63579.0 36 74011.0 37 108152.0 38 166968.0 39 210946.0 40 69.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.948533229491172 31.46305116223341 20.585210480070295 27.003205128205128 2 25.334241952232606 29.160925393402024 19.725766834411694 25.779065819953672 3 21.774153287003752 29.930006390286763 21.191414050643022 27.104426272066455 4 20.906721782890006 30.9590672178289 19.39314741592779 28.741063583353306 5 18.939337207444684 32.87802540138989 17.329409297867244 30.853228093298185 6 20.40198897675533 36.762371195782414 19.796908698777855 23.0387311286844 7 87.14067117980669 4.770498841760524 4.517009146097931 3.571820832334851 8 88.82086728173176 3.673041976196182 3.583178568575765 3.9229121734962855 9 82.17858854541097 6.622683521048008 6.809524522725457 4.38920341081556 10 38.49224179247544 31.255616462976278 13.560637830497644 16.691503914050642 11 29.569679087786565 29.464214394120937 22.235826543653648 18.730279974438854 12 27.64522925153766 24.955193106478156 27.96461877945523 19.434958862528955 13 26.96351545650611 25.449816279255533 25.362573887690708 22.224094376547647 14 22.356892523364486 27.076094336608353 27.837312285326306 22.729700854700855 15 22.470844316638708 28.46685537982267 26.953655443725538 22.108644859813083 16 24.91350647016535 27.40871375509226 25.576124291077562 22.10165548366483 17 22.94050543174375 28.251557632398754 25.993739515935776 22.81419741992172 18 26.049155283968368 25.7281432223021 25.440829938493494 22.78187155523604 19 24.58637870436936 29.034492571291636 24.49951074366962 21.879617980669384 20 27.110292355619457 27.680800183720745 23.80681364326224 21.402093817397557 21 25.90737079638949 28.13685697739436 24.991512900391406 20.964259325824745 22 24.462067657161114 26.614046649093375 25.353213116063582 23.570672577681922 23 24.027353422797347 27.35192507388769 24.79468707564502 23.826034427669942 24 22.58017812924355 27.156347352024923 26.26882139148494 23.994653127246586 25 23.91876847192268 28.20987099608595 23.984543493889287 23.886817038102084 26 25.277702891604758 27.923306574007505 24.196221742950716 22.60276879143702 27 22.86224938094097 26.568990134994806 25.89226875149772 24.6764917325665 28 22.090048126847194 29.41092040099049 26.097456865564343 22.401574606597972 29 23.230564541896317 30.011881939452035 24.09175553159198 22.66579798705967 30 24.771597172298108 26.93743010623852 25.739750579119736 22.551222142343637 31 25.060657800143783 28.16406562025721 23.624840242830896 23.150436336768113 32 25.44657121175813 27.159467609233968 25.219790917804936 22.17417026120297 33 23.48854740793993 27.08071231727774 24.867576284048244 24.563163990734086 34 22.07382278936017 28.417056074766357 26.330976915089067 23.178144220784407 35 23.28261043214314 28.447135354261523 26.183326343957187 22.086927869638153 36 22.87697699496765 31.501991972202255 23.812305295950157 21.808725736879943 37 24.621450395398995 29.32867042096014 22.990179926511704 23.05969925712916 38 23.79345894240754 28.830552560108636 25.293179367361613 22.082809130122214 39 23.7150780813164 26.397625609074204 24.370581715791996 25.516714593817397 40 24.329019889767554 26.232751218148415 24.530089264318235 24.908139627765795 41 21.59966850387411 26.314252336448597 25.912987259365767 26.17309190031153 42 24.050193705567537 27.58594436456586 24.148669023084913 24.21519290678169 43 23.07030813163991 25.51197180285965 26.604436256889528 24.81328380861091 44 24.441723580158158 25.422857256969404 24.781082754213596 25.35433640865884 45 24.649657520568734 25.284068216311205 26.2155273983545 23.850746864765558 46 21.638858934419684 26.350946561226934 27.120401988976756 24.889792515376627 47 22.543858335330295 27.807732246984585 25.488257848070933 24.160151569614186 48 22.414055635434142 25.90312724658519 27.907206046808852 23.775611071171816 49 23.74153786244908 26.03754792715073 27.023549205208084 23.197365005192108 50 22.050358455148174 26.041417046089943 26.34969845834332 25.55852604041856 51 22.641584791117502 24.25488257848071 27.493335130601487 25.610197499800304 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1060.0 1 899.0 2 738.0 3 528.5 4 319.0 5 317.0 6 315.0 7 316.5 8 318.0 9 375.0 10 432.0 11 517.5 12 603.0 13 662.0 14 721.0 15 750.5 16 780.0 17 796.0 18 812.0 19 1019.0 20 1226.0 21 1557.0 22 1888.0 23 2677.5 24 3467.0 25 3638.0 26 5266.5 27 6724.0 28 7960.0 29 9196.0 30 10867.5 31 12539.0 32 14694.0 33 16849.0 34 19207.0 35 21565.0 36 23950.5 37 26336.0 38 28242.0 39 30148.0 40 32012.0 41 33876.0 42 35724.5 43 37573.0 44 43299.5 45 49026.0 46 54155.0 47 59284.0 48 63593.5 49 67903.0 50 65825.5 51 63748.0 52 61562.0 53 59376.0 54 56654.5 55 53933.0 56 50896.0 57 47859.0 58 45095.0 59 42331.0 60 41121.0 61 39911.0 62 35056.0 63 30201.0 64 26807.0 65 23413.0 66 19656.0 67 15899.0 68 14373.0 69 12847.0 70 10400.5 71 7954.0 72 6864.5 73 5775.0 74 5048.5 75 3714.5 76 3107.0 77 2319.0 78 1531.0 79 1207.5 80 884.0 81 610.5 82 337.0 83 251.0 84 165.0 85 109.0 86 53.0 87 43.0 88 33.0 89 26.5 90 20.0 91 12.0 92 4.0 93 3.0 94 2.0 95 2.5 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 801216.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.116991916098325 #Duplication Level Percentage of deduplicated Percentage of total 1 75.35218124459661 18.172679459363124 2 9.165867741467599 4.42106316450001 3 3.1298900410504613 2.2645059845487188 4 1.5078671602063265 1.4546088045298446 5 0.9198235273513554 1.1091688286684847 6 0.704225498604857 1.019028039417819 7 0.5496662540558708 0.9279407623932241 8 0.4356364441717325 0.8404992481957995 9 0.3716727295701113 0.8067265393028917 >10 6.013627184800202 35.779993523389535 >50 1.7173186844105408 27.4983259416739 >100 0.12693455012581142 4.470998737875976 >500 0.003173363753145286 0.4810035444633774 >1k 0.0021155758354301905 0.7534574216773191 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT 2516 0.3140226855180126 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCC 1176 0.1467768991133477 No Hit AATGATACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGT 1132 0.14128524642543333 No Hit AATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCT 1083 0.13516954229571054 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 830 0.10359253934020289 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3523394440450515 0.0 2 0.0 0.0 0.0 0.5097252176691429 0.0 3 0.0 0.0 0.0 0.7231508107676332 0.0 4 0.0 0.0 0.0 1.6215352663950795 0.0 5 0.0 0.0 0.0 1.7467199856218547 0.0 6 0.0 0.0 0.0 2.4759865005192108 0.0 7 0.0 0.0 0.0 2.954883576963016 0.0 8 0.0 0.0 0.0 3.388349708443166 0.0 9 0.0 0.0 0.0 4.0612019730010385 0.0 10 0.0 0.0 0.0 4.982551521687036 0.0 11 0.0 0.0 0.0 5.931484144100967 0.0 12 1.2481028836169023E-4 0.0 0.0 6.361455587506989 0.0 13 1.2481028836169023E-4 0.0 0.0 6.547797348030993 0.0 14 1.2481028836169023E-4 0.0 0.0 6.7605988896876745 0.0 15 1.2481028836169023E-4 0.0 0.0 6.931588984743191 0.0 16 1.2481028836169023E-4 0.0 0.0 7.295785406182603 0.0 17 1.2481028836169023E-4 0.0 0.0 7.725881659876987 0.0 18 1.2481028836169023E-4 0.0 0.0 8.353927030913011 0.0 19 1.2481028836169023E-4 0.0 0.0 8.613906861570413 0.0 20 1.2481028836169023E-4 0.0 0.0 8.963250858694783 0.0 21 1.2481028836169023E-4 0.0 0.0 9.289504952472242 0.0 22 1.2481028836169023E-4 0.0 0.0 9.659068216311207 0.0 23 1.2481028836169023E-4 0.0 0.0 10.011033229491174 0.0 24 1.2481028836169023E-4 0.0 0.0 10.290233844556274 0.0 25 1.2481028836169023E-4 0.0 0.0 10.546344556274462 0.0 26 1.2481028836169023E-4 0.0 0.0 10.765636232925953 0.0 27 1.2481028836169023E-4 0.0 0.0 11.043339124530714 0.0 28 1.2481028836169023E-4 0.0 0.0 11.293209321830817 0.0 29 1.2481028836169023E-4 0.0 0.0 11.543578760284367 0.0 30 1.2481028836169023E-4 0.0 0.0 11.933111670261203 0.0 31 1.2481028836169023E-4 0.0 0.0 12.183730729291478 0.0 32 1.2481028836169023E-4 0.0 0.0 12.454818675613069 0.0 33 1.2481028836169023E-4 0.0 0.0 12.723160795590703 0.0 34 1.2481028836169023E-4 0.0 0.0 12.984139108554997 0.0 35 1.2481028836169023E-4 0.0 0.0 13.263214913331735 0.0 36 1.2481028836169023E-4 0.0 0.0 13.505346872753416 0.0 37 1.2481028836169023E-4 0.0 0.0 13.755217070053519 0.0 38 1.2481028836169023E-4 0.0 0.0 14.032046289639748 0.0 39 1.2481028836169023E-4 0.0 0.0 14.329219586228932 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAAGACG 45 3.8380676E-10 45.000004 1 TTTAGCG 40 6.8102963E-9 45.0 1 CGAAACG 20 7.032005E-4 45.0 1 CGACACG 40 6.8102963E-9 45.0 1 TCTAGCG 35 1.2113196E-7 45.0 1 CCGTCCG 25 3.8897444E-5 45.0 1 AAACGCG 35 1.2113196E-7 45.0 1 ACGATAG 70 0.0 45.0 1 AATTGCG 25 3.8897444E-5 45.0 1 CGTAGGT 20 7.032005E-4 45.0 19 TCGTAAG 25 3.8897444E-5 45.0 1 ACTCCCG 25 3.8897444E-5 45.0 1 ATCGGCG 20 7.032005E-4 45.0 44 GCCGTTT 20 7.032005E-4 45.0 26 ATTACCG 60 0.0 44.999996 1 CGTAGCG 30 2.1646756E-6 44.999996 1 TACGACG 65 0.0 44.999996 1 TCATACG 30 2.1646756E-6 44.999996 1 TACTACG 65 0.0 41.53846 1 ACGGGTC 115 0.0 41.086956 5 >>END_MODULE