SRR3553189_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553189_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	812617
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCTGCT	2743	0.3375513925994657	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCC	1318	0.1621920289632139	No Hit
AATCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGTCTTCT	1248	0.15357788478459103	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAAGTACCGTCGTATGCCGT	1230	0.15136281913865943	No Hit
AGGCCTGGGAATGATACCTGTCTCTTATACACATCTGACGCAAGTACCGTC	855	0.10521561818175106	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACCG	45	3.8380676E-10	45.000004	1
TCTAGCG	45	3.8380676E-10	45.000004	1
TACGACG	45	3.8380676E-10	45.000004	1
GATTAGC	45	3.8380676E-10	45.000004	23
ACCGGTT	20	7.032065E-4	45.0	24
TCACCGA	20	7.032065E-4	45.0	2
ATTAGCG	20	7.032065E-4	45.0	1
CGAAACG	20	7.032065E-4	45.0	1
TTCGTAA	20	7.032065E-4	45.0	30
ACGGGTC	165	0.0	45.0	5
AACGCAC	20	7.032065E-4	45.0	20
AATTCGG	25	3.889793E-5	45.0	2
GTATCGC	20	7.032065E-4	45.0	39
ATGCGAG	40	6.8102963E-9	45.0	1
TACTACG	75	0.0	45.0	1
TATCGAG	20	7.032065E-4	45.0	1
TACACCG	25	3.889793E-5	45.0	1
ACGACAT	20	7.032065E-4	45.0	36
CGAACCG	30	2.1647138E-6	44.999996	1
GCCGATG	100	0.0	42.75	9