SRR3553174_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553174_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	173482
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	880	0.5072572370620583	No Hit
CTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGCT	795	0.4582607993912913	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	240	0.13834288283510682	No Hit
AAACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCT	238	0.1371900254781476	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	229	0.13200216737183107	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTT	210	0.12105002248071846	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGACAA	20	7.016713E-4	45.000004	37
TCTGCGG	20	7.016713E-4	45.000004	2
GGTACCT	30	2.1548185E-6	45.000004	8
TACCCGG	20	7.016713E-4	45.000004	2
GATAATA	25	3.877074E-5	45.000004	40
CACGGGT	25	3.877074E-5	45.000004	4
CTATCGG	20	7.016713E-4	45.000004	2
CTATATA	20	7.016713E-4	45.000004	25
GGGTACC	30	2.1548185E-6	45.000004	7
GGCAACG	30	2.1548185E-6	45.000004	1
AAGACTA	20	7.016713E-4	45.000004	16
ATAGCGG	25	3.877074E-5	45.000004	2
CCAATAG	20	7.016713E-4	45.000004	1
CCTACGA	20	7.016713E-4	45.000004	32
TTGTAAG	20	7.016713E-4	45.000004	1
CGATTGA	20	7.016713E-4	45.000004	15
AAGCGAC	25	3.877074E-5	45.000004	14
TGCGGGT	25	3.877074E-5	45.000004	4
TGACGAC	20	7.016713E-4	45.000004	22
ACGGGTC	20	7.016713E-4	45.000004	5