SRR3553173_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553173_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	193307
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGCT	1000	0.5173118407507229	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	957	0.49506743159844185	No Hit
AAACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCT	337	0.17433409033299363	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTT	275	0.1422607562064488	No Hit
CCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	268	0.13863957332119375	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	248	0.12829333650617927	No Hit
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	203	0.10501430367239675	No Hit
AATCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCT	196	0.10139312078714169	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGTAC	85	0.0	45.000004	6
CCACAAT	20	7.018717E-4	45.0	20
GCCTTAT	20	7.018717E-4	45.0	25
GGTAATT	20	7.018717E-4	45.0	8
GGTAATC	20	7.018717E-4	45.0	8
CGAAATT	20	7.018717E-4	45.0	37
TACCACG	20	7.018717E-4	45.0	1
TGCCAGT	45	3.8198777E-10	45.0	24
GAATGCG	20	7.018717E-4	45.0	12
CATGCGG	20	7.018717E-4	45.0	2
CTATATG	35	1.204935E-7	45.0	1
TATGGGT	20	7.018717E-4	45.0	4
TAGCGTG	20	7.018717E-4	45.0	17
CGGTTAC	20	7.018717E-4	45.0	33
GGCAACG	40	6.7648216E-9	45.0	1
TCTTACG	20	7.018717E-4	45.0	1
ATAGCGG	20	7.018717E-4	45.0	2
CCGGAAT	20	7.018717E-4	45.0	43
AGGACCG	20	7.018717E-4	45.0	19
ACGGGTC	35	1.204935E-7	45.0	5