SRR3553172_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553172_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1416452
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCT	10175	0.7183441443832901	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGT	7510	0.5301979876480106	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCC	7267	0.5130424469025424	No Hit
CTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGCT	5137	0.36266671938053674	TruSeq Adapter, Index 20 (95% over 23bp)
AACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTG	2530	0.17861530076557483	TruSeq Adapter, Index 23 (95% over 21bp)
AATGACTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTT	2200	0.15531765283963028	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCT	2006	0.14162145981649923	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGTGC	45	3.8562575E-10	45.000004	15
CGTATAG	25	3.8912673E-5	45.0	1
TCGATAG	40	6.8175723E-9	45.0	1
AATTGCG	40	6.8175723E-9	45.0	1
TGTTCGA	20	7.0338434E-4	45.0	15
CGAGCTA	20	7.0338434E-4	45.0	27
ACTCACG	50	2.1827873E-11	45.0	1
TTCGATC	20	7.0338434E-4	45.0	17
TATCGTG	20	7.0338434E-4	45.0	44
TACACGA	20	7.0338434E-4	45.0	39
CGAAACG	115	0.0	43.043476	1
ACGATAG	75	0.0	42.0	1
CACTACG	65	0.0	41.53846	1
TCTAGCG	60	3.6379788E-12	41.249996	1
CCGTACC	50	1.0822987E-9	40.5	45
GTATACG	50	1.0822987E-9	40.5	1
CATGACG	90	0.0	40.000004	1
TACGAGT	40	3.4589902E-7	39.375	37
ATACGCG	40	3.4589902E-7	39.375	1
TCACGCG	120	0.0	39.374996	1