SRR3553170_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553170_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	494558
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGCT	2222	0.4492900731562324	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1178	0.2381924870288217	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	606	0.12253365631533612	No Hit
AAACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCT	604	0.1221292548093449	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGT	559	0.11303022092454273	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCC	558	0.11282802017154711	No Hit
AATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCT	528	0.106761997581679	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAAA	25	3.8875707E-5	45.000004	43
ACGCCTA	25	3.8875707E-5	45.000004	12
CTCAATC	25	3.8875707E-5	45.000004	22
ATAGGTT	35	1.2100463E-7	45.000004	45
ATTCGCG	35	1.2100463E-7	45.000004	1
CGCTATA	25	3.8875707E-5	45.000004	19
TGTTCGG	25	3.8875707E-5	45.000004	2
TCGCTAT	25	3.8875707E-5	45.000004	23
TCGAGTA	25	3.8875707E-5	45.000004	38
AATAGCG	35	1.2100463E-7	45.000004	1
ATTGCGG	50	2.1827873E-11	45.000004	2
CCTATCA	25	3.8875707E-5	45.000004	26
TATCGGA	25	3.8875707E-5	45.000004	21
TATCCCG	25	3.8875707E-5	45.000004	1
CTAGACA	20	7.029384E-4	45.0	31
TCGCACT	20	7.029384E-4	45.0	29
GGTCGCA	20	7.029384E-4	45.0	9
CGACGTT	20	7.029384E-4	45.0	24
ACGTTTG	20	7.029384E-4	45.0	24
ACCGCGA	20	7.029384E-4	45.0	26