##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553170_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 494558 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.848808430962595 33.0 31.0 34.0 30.0 34.0 2 32.06900100695975 33.0 31.0 34.0 30.0 34.0 3 32.234914812822765 34.0 31.0 34.0 30.0 34.0 4 35.87819224438792 37.0 35.0 37.0 35.0 37.0 5 35.64715564200761 37.0 35.0 37.0 33.0 37.0 6 34.96910170293474 37.0 35.0 37.0 33.0 37.0 7 35.39371721820292 37.0 35.0 37.0 33.0 37.0 8 35.8015662470327 37.0 35.0 37.0 35.0 37.0 9 37.46238863793529 39.0 37.0 39.0 35.0 39.0 10 37.04416671047683 39.0 37.0 39.0 33.0 39.0 11 37.027808669559484 39.0 37.0 39.0 33.0 39.0 12 36.87521787131135 39.0 37.0 39.0 33.0 39.0 13 36.85648194953878 39.0 37.0 39.0 33.0 39.0 14 38.043258829095876 40.0 37.0 41.0 33.0 41.0 15 38.0461422118336 40.0 37.0 41.0 33.0 41.0 16 37.95400741672362 40.0 37.0 41.0 33.0 41.0 17 37.93336069783524 40.0 37.0 41.0 33.0 41.0 18 37.94509440753157 40.0 37.0 41.0 33.0 41.0 19 37.96550455153895 40.0 37.0 41.0 33.0 41.0 20 37.84199426558664 40.0 37.0 41.0 33.0 41.0 21 37.80461947840294 40.0 36.0 41.0 33.0 41.0 22 37.81926285693488 40.0 36.0 41.0 33.0 41.0 23 37.72814310960494 40.0 36.0 41.0 33.0 41.0 24 37.574634319938205 39.0 36.0 41.0 33.0 41.0 25 37.600742481165 39.0 36.0 41.0 33.0 41.0 26 37.53730603892769 39.0 36.0 41.0 33.0 41.0 27 37.44260733826973 39.0 36.0 41.0 32.0 41.0 28 37.349471649432424 39.0 36.0 41.0 32.0 41.0 29 37.138564132012824 39.0 35.0 41.0 32.0 41.0 30 37.16991333675727 39.0 35.0 41.0 32.0 41.0 31 37.13212808204498 39.0 35.0 41.0 32.0 41.0 32 37.04774970781991 39.0 35.0 41.0 31.0 41.0 33 36.818084026544916 39.0 35.0 41.0 31.0 41.0 34 36.766931280052084 39.0 35.0 41.0 31.0 41.0 35 36.727750840144125 39.0 35.0 41.0 31.0 41.0 36 36.63589508207328 39.0 35.0 40.0 31.0 41.0 37 36.59221365340365 39.0 35.0 40.0 31.0 41.0 38 36.41766789739525 39.0 35.0 40.0 30.0 41.0 39 36.423903768617635 39.0 35.0 40.0 30.0 41.0 40 36.337541805005685 38.0 35.0 40.0 30.0 41.0 41 36.3047589969225 38.0 35.0 40.0 30.0 41.0 42 36.24037018913859 38.0 35.0 40.0 30.0 41.0 43 36.1445492743015 38.0 35.0 40.0 30.0 41.0 44 36.030849768884536 38.0 35.0 40.0 30.0 41.0 45 35.83458360798936 38.0 35.0 40.0 30.0 41.0 46 35.63947201339378 38.0 34.0 40.0 29.0 41.0 47 35.508183064473734 38.0 34.0 40.0 29.0 41.0 48 35.41435584906118 37.0 34.0 40.0 29.0 41.0 49 35.344307442200915 37.0 34.0 40.0 28.0 41.0 50 35.265997112573245 37.0 34.0 40.0 28.0 41.0 51 34.14004221951723 36.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 5.0 11 10.0 12 4.0 13 11.0 14 7.0 15 19.0 16 52.0 17 102.0 18 196.0 19 381.0 20 753.0 21 967.0 22 1418.0 23 1856.0 24 2433.0 25 2901.0 26 3325.0 27 4097.0 28 4979.0 29 6672.0 30 8780.0 31 11400.0 32 14915.0 33 20733.0 34 32865.0 35 40690.0 36 48668.0 37 69793.0 38 101981.0 39 114512.0 40 31.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.837915876398725 31.307753590074373 21.92179683677142 26.932533696755485 2 24.041265129671345 30.162084123601275 19.78938769567978 26.0072630510476 3 20.335936331026897 31.140735768100004 19.894329886484496 28.628998014388607 4 21.06992506440094 31.33060227516287 19.95680991916014 27.642662741276048 5 18.21667023887997 33.203385649408155 17.413731048734427 31.166213062977448 6 19.75663117369449 38.11362873515341 19.210891341359353 22.918848749792744 7 86.07584954646372 5.168049045814647 4.665580174620571 4.0905212331010725 8 87.06238702032927 4.360459238350203 4.02116637482358 4.555987366496953 9 80.38794236469737 7.5558377379397355 7.6021417103757285 4.454078186987168 10 37.346681279041086 32.40085086076861 13.029816523036732 17.22265133715358 11 29.1444077337744 29.25116973135608 22.57773607948916 19.02668645538036 12 27.254235094771495 24.129829059483416 27.746998329821782 20.868937515923307 13 26.923232462117692 24.962896161825306 25.227172545990562 22.886698830066443 14 22.364616485831792 27.20146069823964 27.726980455275214 22.70694236065335 15 21.905822977284767 27.871958395173063 27.774497632229185 22.447720995312988 16 23.680134584821193 27.562186841583795 25.69102107336248 23.06665750023253 17 22.725140428422954 27.443899401081367 26.202184576935366 23.62877559356031 18 25.995939808879847 25.952871048491783 24.595092992126304 23.456096150502066 19 24.790014518014065 29.77325207559073 23.63484161615018 21.801891790245026 20 26.63064797253305 27.743965318526847 23.78285256734296 21.842534141597145 21 25.44979557503872 28.374022864861146 24.073819450903635 22.102362109196495 22 24.18866947860514 26.10310620796752 24.743103943319085 24.965120370108256 23 24.433130188976822 27.76357879156742 23.525046607273563 24.27824441218219 24 21.667630490255945 27.431160753642647 26.417730579628678 24.48347817647273 25 23.926415101969837 27.81594878659328 23.816215691587235 24.441420419849642 26 25.72317099308878 26.315619199365898 24.024280266419712 23.93692954112561 27 23.445581711346293 26.49133165371908 23.747063034062737 26.31602360087189 28 22.91035631816693 28.390401125853792 26.615280715305385 22.083961840673894 29 26.225235462776865 27.68997771747702 22.824420998143797 23.26036582160232 30 25.115153328830996 26.125348290797035 25.57900185620291 23.180496524169055 31 28.138256786868276 27.086812871291134 21.778032101391545 22.99689824044905 32 26.239389515486554 25.44959337428573 24.351036683260606 23.95998042696711 33 24.388241621811797 25.678889028182738 23.903566416881336 26.02930293312412 34 24.378940387174 26.608405889703533 26.608405889703533 22.404247833418932 35 25.039732447963637 25.369521876099466 26.363742978578852 23.227002697358046 36 25.53957270936877 30.42130548894164 23.66517172909952 20.37395007259007 37 25.920721128765482 28.013701123022983 22.9485722604831 23.117005487728438 38 25.73732504579847 27.03686928530122 24.403608879039464 22.822196789860847 39 24.845013122828867 25.561612591445293 24.289163252843952 25.304211032881884 40 25.166310119338885 25.809915116123893 25.40187399657876 23.621900767958458 41 22.743945098451547 24.61955928323877 27.596965371099042 25.03953024721064 42 25.564039000481237 24.652518005977054 25.718520375769877 24.064922617771828 43 23.663554123075553 24.306956919107567 26.911100416937956 25.11838854087893 44 25.91263309864566 23.645153854552955 24.25256491655175 26.189648130249637 45 26.371831008698678 23.00417746755689 25.89524383388804 24.728747689856398 46 22.857784122388072 24.889092886981913 27.001888555032977 25.251234435597038 47 23.153806024773633 26.182368903141796 26.475357794232423 24.188467277852144 48 23.74241241674384 25.055099705191303 28.173237517136513 23.029250360928344 49 23.927426105734817 24.449912851475457 27.2952818476296 24.327379195160123 50 22.428916325284394 24.315853752239374 26.640960210935827 26.614269711540405 51 23.427181442823695 22.055047132995522 28.782063984406275 25.735707439774508 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1429.0 1 1188.0 2 947.0 3 665.0 4 383.0 5 385.0 6 387.0 7 450.0 8 513.0 9 563.5 10 614.0 11 756.5 12 899.0 13 983.0 14 1067.0 15 1082.5 16 1098.0 17 1080.5 18 1063.0 19 1163.5 20 1264.0 21 1408.5 22 1553.0 23 1725.0 24 1897.0 25 2426.5 26 3117.0 27 3278.0 28 4146.5 29 5015.0 30 5224.0 31 5433.0 32 6749.5 33 8066.0 34 8539.0 35 9012.0 36 9939.5 37 10867.0 38 12203.5 39 13540.0 40 15291.5 41 17043.0 42 19648.0 43 22253.0 44 26240.0 45 30227.0 46 34665.0 47 39103.0 48 40364.0 49 41625.0 50 42768.5 51 43912.0 52 41207.5 53 38503.0 54 36262.0 55 34021.0 56 31883.5 57 29746.0 58 27024.5 59 24303.0 60 24561.0 61 24819.0 62 21680.5 63 18542.0 64 17349.0 65 16156.0 66 14346.0 67 12536.0 68 11105.5 69 9675.0 70 7900.5 71 6126.0 72 5480.0 73 4834.0 74 4005.0 75 3046.0 76 2916.0 77 2364.0 78 1812.0 79 1465.5 80 1119.0 81 743.0 82 367.0 83 339.5 84 312.0 85 174.5 86 37.0 87 36.0 88 35.0 89 25.5 90 16.0 91 18.5 92 21.0 93 29.5 94 38.0 95 20.0 96 2.0 97 1.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 494558.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.019149016735906 #Duplication Level Percentage of deduplicated Percentage of total 1 75.9804235086666 19.769459616267003 2 9.959448434714963 5.182727458946915 3 3.7613833173942535 2.9360397913303653 4 1.9079653736559268 1.9857454150370304 5 1.0612876942062393 1.3806901332590094 6 0.6881755337891983 1.0743445057999754 7 0.45969192546084103 0.8372554897249115 8 0.32866065381956666 0.6841176422135326 9 0.2776689062479234 0.650223778408091 >10 3.7139873362945193 24.14093907651071 >50 1.4730447277616556 27.224882151090213 >100 0.382772005935936 12.857016362599277 >500 0.003921844323114099 0.5826658261408448 >1k 0.0015687377292456395 0.6938927526721094 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGCT 2222 0.4492900731562324 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1178 0.2381924870288217 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 606 0.12253365631533612 No Hit AAACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCT 604 0.1221292548093449 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGT 559 0.11303022092454273 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCC 558 0.11282802017154711 No Hit AATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCT 528 0.106761997581679 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.49862705688715986 0.0 2 0.0 0.0 0.0 0.7085114384965969 0.0 3 0.0 0.0 0.0 0.9651041940480186 0.0 4 0.0 0.0 0.0 2.081454551336749 0.0 5 0.0 0.0 0.0 2.262424225267815 0.0 6 0.0 0.0 0.0 3.3593633102689675 0.0 7 0.0 0.0 0.0 4.1356120010190915 0.0 8 0.0 0.0 0.0 4.969487906372963 0.0 9 0.0 0.0 0.0 5.938433914727899 0.0 10 0.0 0.0 0.0 7.434719486895369 0.0 11 0.0 0.0 0.0 8.590094589512251 0.0 12 0.0 0.0 0.0 9.237945802110167 0.0 13 0.0 0.0 0.0 9.504244193805377 0.0 14 0.0 0.0 0.0 9.78105702465636 0.0 15 0.0 0.0 0.0 10.007319667258441 0.0 16 0.0 0.0 0.0 10.483098039057097 0.0 17 0.0 0.0 0.0 11.032275284193158 0.0 18 0.0 0.0 0.0 11.939550062884434 0.0 19 0.0 0.0 0.0 12.238200575058942 0.0 20 0.0 0.0 0.0 12.64300648255614 0.0 21 0.0 0.0 0.0 13.020515288398935 0.0 22 0.0 0.0 0.0 13.408336332644502 0.0 23 0.0 0.0 0.0 13.794944172372098 0.0 24 0.0 0.0 0.0 14.085708855179776 0.0 25 0.0 0.0 0.0 14.354433655910935 0.0 26 0.0 0.0 0.0 14.589390930891827 0.0 27 0.0 0.0 0.0 14.91675394999171 0.0 28 0.0 0.0 0.0 15.203676818492472 0.0 29 0.0 0.0 0.0 15.501720728407992 0.0 30 0.0 0.0 0.0 15.978914505477618 0.0 31 0.0 0.0 0.0 16.233080851993094 0.0 32 0.0 0.0 0.0 16.53031595889663 0.0 33 0.0 0.0 0.0 16.809150797277567 0.0 34 0.0 0.0 0.0 17.055026912920223 0.0 35 0.0 0.0 0.0 17.32658252419332 0.0 36 0.0 0.0 0.0 17.59025230609959 0.0 37 0.0 0.0 0.0 17.84583405788603 0.0 38 0.0 0.0 0.0 18.138822948976664 0.0 39 0.0 0.0 0.0 18.464770562805576 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCAAA 25 3.8875707E-5 45.000004 43 ACGCCTA 25 3.8875707E-5 45.000004 12 CTCAATC 25 3.8875707E-5 45.000004 22 ATAGGTT 35 1.2100463E-7 45.000004 45 ATTCGCG 35 1.2100463E-7 45.000004 1 CGCTATA 25 3.8875707E-5 45.000004 19 TGTTCGG 25 3.8875707E-5 45.000004 2 TCGCTAT 25 3.8875707E-5 45.000004 23 TCGAGTA 25 3.8875707E-5 45.000004 38 AATAGCG 35 1.2100463E-7 45.000004 1 ATTGCGG 50 2.1827873E-11 45.000004 2 CCTATCA 25 3.8875707E-5 45.000004 26 TATCGGA 25 3.8875707E-5 45.000004 21 TATCCCG 25 3.8875707E-5 45.000004 1 CTAGACA 20 7.029384E-4 45.0 31 TCGCACT 20 7.029384E-4 45.0 29 GGTCGCA 20 7.029384E-4 45.0 9 CGACGTT 20 7.029384E-4 45.0 24 ACGTTTG 20 7.029384E-4 45.0 24 ACCGCGA 20 7.029384E-4 45.0 26 >>END_MODULE