SRR3553169_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553169_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	504239
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGCT	2466	0.48905380186776515	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1287	0.2552361082740526	No Hit
AAACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCT	679	0.13465836636991585	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCC	658	0.1304936746265164	No Hit
AATCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCT	633	0.12553570826532656	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGT	616	0.12216429113971747	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	588	0.11661136881518486	No Hit
AACCCTGGGAATGATACCTGTCTCTTATACACATCTGACGCTGAGGCATTC	575	0.11403322630736616	No Hit
AACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCT	524	0.10391897493053888	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCAG	20	7.029516E-4	45.0	13
ACTATTG	20	7.029516E-4	45.0	1
TCGTTTA	20	7.029516E-4	45.0	31
CGTATCT	20	7.029516E-4	45.0	21
GTACAAT	20	7.029516E-4	45.0	30
TCCGATT	20	7.029516E-4	45.0	15
CCGATCG	35	1.2101191E-7	45.0	26
CGTGCCG	20	7.029516E-4	45.0	34
ACGCAGT	20	7.029516E-4	45.0	36
ACGCACG	20	7.029516E-4	45.0	1
TCCGAAC	20	7.029516E-4	45.0	41
GTCCTCG	20	7.029516E-4	45.0	22
CGCATTG	20	7.029516E-4	45.0	1
TAGAACG	35	1.2101191E-7	45.0	1
ATTAACG	45	3.8380676E-10	45.0	1
CTGACGT	20	7.029516E-4	45.0	26
CCGTATG	25	3.887681E-5	45.0	35
GTAGCGT	20	7.029516E-4	45.0	29
TACGCCT	20	7.029516E-4	45.0	42
ATATAGA	45	3.8380676E-10	45.0	41