SRR3553168_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553168_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	339475
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	2222	0.6545400986817881	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1181	0.34789012445688194	No Hit
AAACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT	729	0.21474335370793135	No Hit
AATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT	574	0.16908461595110097	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTT	561	0.16525517342956034	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCC	524	0.15435599086825244	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGT	504	0.14846454083511304	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	484	0.14257309080197364	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	413	0.12165844318432874	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCT	356	0.10486781058988144	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	347	0.1022166580749687	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGATG	30	2.1609649E-6	45.000004	21
GGCGTGA	30	2.1609649E-6	45.000004	19
AAGGTAG	30	2.1609649E-6	45.000004	1
TGTGCCA	30	2.1609649E-6	45.000004	29
CACTCTA	30	2.1609649E-6	45.000004	44
CGGGCTA	30	2.1609649E-6	45.000004	6
GTATCTA	30	2.1609649E-6	45.000004	23
GCGTGAT	30	2.1609649E-6	45.000004	20
AACTACG	30	2.1609649E-6	45.000004	1
TATACGG	30	2.1609649E-6	45.000004	2
TTACCGG	30	2.1609649E-6	45.000004	2
CGATCCC	30	2.1609649E-6	45.000004	43
CAATACG	30	2.1609649E-6	45.000004	1
ACTATCC	25	3.884979E-5	45.0	35
ACTATAA	25	3.884979E-5	45.0	32
TGCCCGC	25	3.884979E-5	45.0	45
TCACCCG	25	3.884979E-5	45.0	15
ATTAGCG	35	1.2085547E-7	45.0	1
CTCGTAA	20	7.0262566E-4	45.0	33
CGAGTTA	20	7.0262566E-4	45.0	45