SRR3553167_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553167_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	344951
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	2382	0.690532858290018	Illumina Single End Adapter 1 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1279	0.37077729880475774	No Hit
AAACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT	857	0.24844108293641703	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTT	641	0.18582349377157917	No Hit
AATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT	627	0.18176494632571005	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGT	576	0.16698023777290108	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCC	550	0.15944293537342985	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	460	0.13335227322141407	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	412	0.11943725340700564	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCT	348	0.10088389365446107	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTAGT	35	1.2086275E-7	45.000004	16
TCGGGTT	35	1.2086275E-7	45.000004	35
GGATAGT	35	1.2086275E-7	45.000004	8
TGACGAT	35	1.2086275E-7	45.000004	28
ATGACGA	35	1.2086275E-7	45.000004	27
GACGATT	35	1.2086275E-7	45.000004	29
TACACGC	35	1.2086275E-7	45.000004	35
ACAACGC	20	7.0264144E-4	45.0	38
TAGAGTC	25	3.885111E-5	45.0	42
AAGTAGC	20	7.0264144E-4	45.0	20
CTATGCG	40	6.7902874E-9	45.0	1
CCTTAGG	20	7.0264144E-4	45.0	2
CTGTCGA	20	7.0264144E-4	45.0	12
CAAACTA	20	7.0264144E-4	45.0	25
CGAACGT	20	7.0264144E-4	45.0	37
CGAACCA	20	7.0264144E-4	45.0	14
CGTGCTT	25	3.885111E-5	45.0	30
CAACGAA	20	7.0264144E-4	45.0	29
CGTGCAC	20	7.0264144E-4	45.0	21
CGTTGTA	25	3.885111E-5	45.0	33