SRR3553160_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553160_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	700939
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT	3912	0.5581084801958516	Illumina Single End Adapter 2 (95% over 21bp)
CTCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCCTTTCTGGTC	1333	0.19017346730599954	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1238	0.1766202194484827	No Hit
CTCCCAGGGAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTCTGG	941	0.13424848667287737	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	872	0.12440454875531251	No Hit
AAACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCT	855	0.12197923071765161	No Hit
AGCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCCTTTCTGGTC	799	0.11398994777006273	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	701	0.10000870261178219	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTCGC	30	2.1642845E-6	45.000004	14
GTCGAAA	20	7.0314E-4	45.000004	21
TAGGTCG	20	7.0314E-4	45.000004	37
CTATACG	20	7.0314E-4	45.000004	1
ATAGCGA	20	7.0314E-4	45.000004	37
CGATTCA	20	7.0314E-4	45.000004	24
TAACGGT	30	2.1642845E-6	45.000004	3
TATTCCG	30	2.1642845E-6	45.000004	1
ACTCGAA	20	7.0314E-4	45.000004	26
TTAGTCG	40	6.8084773E-9	45.000004	31
AATTACG	40	6.8084773E-9	45.000004	1
AACTCGA	20	7.0314E-4	45.000004	25
ATCGGCC	30	2.1642845E-6	45.000004	30
TAGTCGG	20	7.0314E-4	45.000004	2
CGTTCAC	25	3.8892435E-5	45.0	30
GCGCACT	25	3.8892435E-5	45.0	16
GCCGATA	25	3.8892435E-5	45.0	24
ACGTGCG	35	1.2110286E-7	45.0	1
TATAGCG	25	3.8892435E-5	45.0	1
AATAGCG	50	2.1827873E-11	45.0	1