Basic Statistics
Measure | Value |
---|---|
Filename | SRR3553160_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 700939 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT | 3912 | 0.5581084801958516 | Illumina Single End Adapter 2 (95% over 21bp) |
CTCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCCTTTCTGGTC | 1333 | 0.19017346730599954 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 1238 | 0.1766202194484827 | No Hit |
CTCCCAGGGAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTCTGG | 941 | 0.13424848667287737 | No Hit |
CCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC | 872 | 0.12440454875531251 | No Hit |
AAACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCT | 855 | 0.12197923071765161 | No Hit |
AGCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCCTTTCTGGTC | 799 | 0.11398994777006273 | No Hit |
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG | 701 | 0.10000870261178219 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCTCGC | 30 | 2.1642845E-6 | 45.000004 | 14 |
GTCGAAA | 20 | 7.0314E-4 | 45.000004 | 21 |
TAGGTCG | 20 | 7.0314E-4 | 45.000004 | 37 |
CTATACG | 20 | 7.0314E-4 | 45.000004 | 1 |
ATAGCGA | 20 | 7.0314E-4 | 45.000004 | 37 |
CGATTCA | 20 | 7.0314E-4 | 45.000004 | 24 |
TAACGGT | 30 | 2.1642845E-6 | 45.000004 | 3 |
TATTCCG | 30 | 2.1642845E-6 | 45.000004 | 1 |
ACTCGAA | 20 | 7.0314E-4 | 45.000004 | 26 |
TTAGTCG | 40 | 6.8084773E-9 | 45.000004 | 31 |
AATTACG | 40 | 6.8084773E-9 | 45.000004 | 1 |
AACTCGA | 20 | 7.0314E-4 | 45.000004 | 25 |
ATCGGCC | 30 | 2.1642845E-6 | 45.000004 | 30 |
TAGTCGG | 20 | 7.0314E-4 | 45.000004 | 2 |
CGTTCAC | 25 | 3.8892435E-5 | 45.0 | 30 |
GCGCACT | 25 | 3.8892435E-5 | 45.0 | 16 |
GCCGATA | 25 | 3.8892435E-5 | 45.0 | 24 |
ACGTGCG | 35 | 1.2110286E-7 | 45.0 | 1 |
TATAGCG | 25 | 3.8892435E-5 | 45.0 | 1 |
AATAGCG | 50 | 2.1827873E-11 | 45.0 | 1 |