SRR3553149_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553149_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1071103
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGCT	6706	0.6260835792636189	Illumina Single End Adapter 2 (95% over 22bp)
AATCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCT	3620	0.3379693642908292	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCC	3322	0.31014757684368355	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGT	3234	0.30193174699351977	No Hit
ACCCCCGGGAATGATACCTGTCTCTTATACACATCTGACGCTGTGTAGGTC	2542	0.2373254486263226	No Hit
CCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	1521	0.1420031500238539	Illumina Single End Adapter 2 (95% over 21bp)
ACCCCCGGGAATGATACGGCTGTCTCTTATACACATCTGACGCTGTGTAGG	1451	0.13546783082485997	No Hit
ACCCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCT	1149	0.1072725965663433	No Hit
ACCCCCGGGAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCT	1114	0.10400493696684633	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	40	6.8139343E-9	45.000004	1
CCCCCGG	1945	0.0	41.876606	2
ACCCCCG	1845	0.0	40.85366	1
CCCGGGA	2230	0.0	40.661434	4
CGGGAAT	2720	0.0	40.202206	6
CCCCGGG	2360	0.0	39.947033	3
CTACTAG	85	0.0	39.705883	1
CCGATAG	40	3.4579352E-7	39.375004	1
ACGCTAG	40	3.4579352E-7	39.375004	1
TACTACG	40	3.4579352E-7	39.375004	1
CCGGGAA	2310	0.0	39.05844	5
GGGAATG	4480	0.0	38.219864	7
ACGGGTA	395	0.0	37.594936	5
GCCTCGG	270	0.0	37.5	2
GGAATGA	4225	0.0	37.22485	8
TGCTACG	115	0.0	37.173912	1
CTTACGG	250	0.0	36.899998	2
CAGACGG	185	0.0	36.486485	2
AGGGCCT	870	0.0	36.465515	6
CTCGCGG	180	0.0	36.25	2