SRR3553145_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553145_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1022250
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGCT	4919	0.48119344583027635	No Hit
AATCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCT	2455	0.2401565174859379	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCC	1866	0.18253851797505502	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGT	1846	0.1805820494008315	No Hit
CCTGTCTCTTATACACATCTGACGCCAACCGATTCGTATGCCGTCTTCTGC	1165	0.11396429444852042	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGCAG	50	2.1827873E-11	45.0	1
CCTCACG	90	0.0	42.5	1
CGCATAG	65	0.0	41.538464	1
CCACGCG	60	3.6379788E-12	41.250004	1
CCTCGCG	50	1.0804797E-9	40.5	1
CTCACGG	290	0.0	39.56897	2
ACCGCGG	270	0.0	38.333332	2
CAACCCG	100	0.0	38.25	1
AACCGCG	190	0.0	37.894737	1
ACAGGGC	855	0.0	37.63158	4
CCCAGCG	60	1.546141E-10	37.500004	1
CCCGTAG	30	1.1398334E-4	37.500004	1
TCGCGCG	30	1.1398334E-4	37.500004	1
TAGGGAC	550	0.0	37.227272	5
AGGGCGT	370	0.0	37.094593	6
GGGCGTC	250	0.0	36.899998	7
TCTCGCG	55	2.748493E-9	36.818184	1
CGTACAG	55	2.748493E-9	36.818184	1
CAGGGCA	765	0.0	36.764706	5
ATGGGCC	460	0.0	36.68478	5