SRR3553125_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553125_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	791275
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT	4813	0.60825882278601	No Hit
GCCCCTGGGAATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTC	2031	0.2566743546807368	No Hit
AATCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCT	1969	0.24883889924488958	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCC	1914	0.24188809200341221	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGT	1677	0.21193643170831886	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	1061	0.1340873906037724	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	863	0.10906448453445389	No Hit
GCCCCTGGGAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACAAG	824	0.10413573030867904	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTAGGT	20	7.0319534E-4	45.0	24
ACGTGTA	25	3.8896993E-5	45.0	27
TCGTACG	20	7.0319534E-4	45.0	12
CCGACAG	40	6.8102963E-9	45.0	1
GTCCCGT	20	7.0319534E-4	45.0	27
TAGTGCG	20	7.0319534E-4	45.0	1
TATCCCG	35	1.2112832E-7	45.0	1
CGGACCA	20	7.0319534E-4	45.0	6
TAGCGCG	65	0.0	41.538464	1
CCCCTGG	1525	0.0	41.459015	2
ATCTACG	60	3.6379788E-12	41.249996	1
GGCGAGT	55	6.002665E-11	40.90909	8
CGCTACG	45	1.9270374E-8	40.0	1
AAGGGTC	210	0.0	39.642857	5
ATAGGGC	485	0.0	39.43299	4
CACTGCG	80	0.0	39.375	1
TGCGCGA	40	3.4564073E-7	39.375	17
ACGTGCG	40	3.4564073E-7	39.375	1
ATAGGGA	420	0.0	39.107143	4
GGGAATG	3070	0.0	39.06352	7